Previous Versions
Cell Ranger 8.0.1 (May 15, 2024)
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Download for Linux 64-bit (tar.gz)File size: 702 MBmd5sum: 1d08d8005b026fc1ca3c867bc67b2dbdcurlwgetcurl -o cellranger-8.0.1.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-8.0.1.tar.gz?Expires=1732302613&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Y9GNO-5GQ99KpGcJk6TG0HId8lOhIOF3JAmcJYGL3kJ6kB4hw2CEeOSGQ31N-VbOPKSH7zfelaICViIRG0RVlLxMmngqXTaIpe6xQKnCWrzMBtP1i6tLlM4YIk~jryDJWJ4jJbEA75nmZexAglOve5M4KP1UCzI0dgoEkCYRvraucDTcq~4wLtrp2~GnsavMX0rAa5DsyMhqUCohsKJkMw1PR5UQbbPInhLWw9dQeefidh-1SwQJ5YZF8xmeWxh6nwUDj52sLSCW~tHJHyaBBtYwHBU35J71w8dkZ51vU5frMaovl4pkVnxNotf~O702BsG0FyVZPM8Tnt8O6FY5ZA__"
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Download for Linux 64-bit (tar.xz)File size: 453 MBmd5sum: 5d112b68f8819d50e54a9f3809cf5533curlwgetcurl -o cellranger-8.0.1.tar.xz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-8.0.1.tar.xz?Expires=1732302613&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=XlX~3iejlaTmrEbGsDlC2eet4RdwmKH0-ELFyO1cOSGSzt8aPPEk8cXECcJWeMxU2tnQnVbjXlKNZU3qQ4dPtwEpvvbGfo3fWkIFrBy1UJ1N~ChsEkEHhwnd3qBrM~hKfLnmFpaKU0Aj~iJjnMu3jX6fnEeevFA~IJaoXDQhDw-qgXNK8GQfZp38dcZERGF9kFDEXC3wzQjA6o80WtuEreOiuq3p9pi58EpVBvKslhTC3TkTLtxZI6ps600lXEh5p8TkPW68qJSk9gn3zDaCSfoNWvzlenFyMZjo7dZLgqvpQAlYVWo7E0XSLDwceV-dxz3H9KsLYlEDMuagqAsXQg__"
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Cell Ranger 8.0.1 highlights
- New feature: Supports the analysis of Chromium GEM-X Single Cell Gene Expression v4 and Chromium GEM-X Single Cell Immune Profiling v3 libraries
- Support for Low Throughput (LT) libraries has been disabled
- v8.0.1 fixes bugs and introduces a new optional parameter (min-crispr-umi) to customize the minimum number of CRISPR guide RNA UMIs for protospacer detection
Cell Ranger 7.2.0 (Sep 13, 2023)
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Download for Linux 64-bit (tar.gz)File size: 653 MBmd5sum: 85e2573e80a6f8656a42ff09460463e6curlwgetcurl -o cellranger-7.2.0.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-7.2.0.tar.gz?Expires=1732302613&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=dwxuC7z8-qIUu-XGoi3e661AGtXEoZItGxMR7Q7rRmrPch6MYcBMW3sA35QxhcphbpSuJyMLtZM0OYgjKyMdu5x5CzT8SOfRZRyWwRc8wL43Rbg9tkJbjaClCU01UzNa5MhnAw4CJTW8SVXwjwt4cR6zOsp0eNWQf2CXyjORZ3-a4mNYFoAjzgFZZsmqpyhnSsJ9QLcKgPmX-sB-Cc-REqVhze0kHRc6jm9xTgofYgXLt0-w33nUqqmYsz4GETWYtDRdiKJ3ClL8PjK7DNKIHQbq76psQ2VQxYAY94ociuoiv20AiZ2c-FxC20i7HTMtna6PtF0Vy21qdL-Kq8q5kA__"
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Download for Linux 64-bit (tar.xz)File size: 436 MBmd5sum: 64f2c8c813dbdc030a80ad59096dc9a2curlwgetcurl -o cellranger-7.2.0.tar.xz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-7.2.0.tar.xz?Expires=1732302613&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=FfOm2aJJblZY-bno44SJl5-TmUlP1l1~l7wzNyFAIypSd5V6ohlSjEjFplXNnbwWwG6tgJf1yaHXq0vpTZAKrQyf-ewGeEcBb9KTW0i6dXI04HrQJShSkvdA7LVue1WQaraco3y9XrRLfor-b23wb0exC7XSrFDLe1BOuTXsOfrKZUya8AIYdAQqAeBSC1g0EZok3Tq0~AS-B3v8zRe2byz90VSZunPPx1UGUoLCRV80FAEabdR4FJYMT5ab0nCehTsp1Hzg9UBD-gWZ5uxlrveiLOu0qheUZgB5bXgaIMHGJYCQ4KfKSNhnWq~9VoTLNPoD4OcbKTOIQzBtv5dFzQ__"
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Cell Ranger 7.2.0 highlights
- New feature: Supports the analysis of Multiplexed Gene Expression with Antibody Capture (Cell Surface Protein)
- New feature: Supports the aggregation of BEAM (Antigen Capture) libraries with cellranger aggr
- Several improvements to the web summary output files generated by cellranger multi and aggr pipelines
Cell Ranger 7.1.0 (Dec 7, 2022)
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Download for Linux 64-bit (tar.gz)File size: 639 MBmd5sum: 0938af789631800b20176527063c029acurlwgetcurl -o cellranger-7.1.0.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-7.1.0.tar.gz?Expires=1732302613&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=iz7o4SwvJiya0nXdrWuKJtzIEqKYF-JnnO5ctc98ftM8l2LTeEnLl6FJPyvlIOB28I2I80r-Wu3GtlNpBeynDpxCUKX~mbXTGd62-NDI~l3J-4CDxEptHWDiaB5ZNoQ81cahbAJoToxpl~MXbXpBYqQzXnIp7iEupcS5zZf-ZXI08A6rtMoY9ZwoPdfVN1XRPus29c0AZ72iqEgaUibIq6OqlUTaMyL5C~n2ohHeEPwf5H0BHZrd0B0OyD92IQq1l54un45~chvQ6z7OwdaZkg3-18awd62Igjdmxlzb7FuHA9s7TSkKtcYtf33lInnd0raXvBKKzSnCUukuRIc3kQ__"
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Download for Linux 64-bit (tar.xz)File size: 379 MBmd5sum: 1b90a1b0a785c34ecd5ed9227f72f78fcurlwgetcurl -o cellranger-7.1.0.tar.xz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-7.1.0.tar.gz?Expires=1732302613&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=iz7o4SwvJiya0nXdrWuKJtzIEqKYF-JnnO5ctc98ftM8l2LTeEnLl6FJPyvlIOB28I2I80r-Wu3GtlNpBeynDpxCUKX~mbXTGd62-NDI~l3J-4CDxEptHWDiaB5ZNoQ81cahbAJoToxpl~MXbXpBYqQzXnIp7iEupcS5zZf-ZXI08A6rtMoY9ZwoPdfVN1XRPus29c0AZ72iqEgaUibIq6OqlUTaMyL5C~n2ohHeEPwf5H0BHZrd0B0OyD92IQq1l54un45~chvQ6z7OwdaZkg3-18awd62Igjdmxlzb7FuHA9s7TSkKtcYtf33lInnd0raXvBKKzSnCUukuRIc3kQ__"
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Cell Ranger 7.0.0 (Aug 18, 2022)
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Download for Linux 64-bit (tar.gz)File size: 600 MBmd5sum: 98ffff631adb7298d38194073626817fcurlwgetcurl -o cellranger-7.0.0.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-7.0.0.tar.gz?Expires=1732302613&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=m4rVd-ckGIcSoOOHCRIWrSWADMwQ4H321xMNRd7UgdRpzZIG5L7JBMVLoW4vxDQikCrZoix25QMESxzSjmE6SEaOexYisAYNPs1zVqNnyW-y7VQksR6LMowX9~QgTc9MVvGJTCYGR7TuIvn8l8C6CyvbA4dZBCLvd7ukwK2Hl2jYuXm8bearyNGJpKID5etrqJZnslqufRifOUiOUBbTi7cAtvk~7dfcGWdS3n8g41pko5mr6NXvZnfSsqAoE9FiwKU-oKAbXdxu1cyPgIDUM6NsLM8vHpWUHF9SPXt6FuIyALJaWo5VEDDBaOHLGPrDYj0DsR53QYivcXo3kDFw-A__"
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Cell Ranger 6.1.2 (Oct 25, 2021)
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Download for Linux 64-bit (tar.gz)File size: 768 MBmd5sum: 310d4453acacf0eec52e76aded14024ccurlwgetcurl -o cellranger-6.1.2.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-6.1.2.tar.gz?Expires=1732302613&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=cp6fkcHjcWXI6K3FI2DKQzkeDxQujyYDZ8pKVFfa3WYBvkoezhnCHMBZ7AJ8wMmhTFdeF4g4IAvYy3RG7xcX~3B~L8AKu-rYN~DQxqNjRPmPDoqIKJHH4mcVeBctwCr22RK~8aC7WpFg2rTzwtktbMTWRgMqDx2-DWS9DQddLIbbcAQj98EKAdKS7QaK2oi~arAMiGykAlw41Ap5xGIbndCo4SZH6MmbwFd-be4hdFIG1fMD~6BJt76pNx8nsPVci6Cs4p2OdjvaZ-yo0Y-euYFgEWlVS6XCxXQ1KTFJQn2hJl0eFLvqtLRGl5iekgYnxtvoyCeZ4uanlcb~gwdKiw__"
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Cell Ranger 6.0.2 (Jun 21, 2021)
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Download for Linux 64-bit (tar.gz)File size: 1.1 GBmd5sum: 5e98504fcccd3e7257c167f0fea399facurlwgetcurl -o cellranger-6.0.2.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-6.0.2.tar.gz?Expires=1732302613&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=M7sniUDYhRJ07CiAFaqxVr3lXUErwq6JT~Bx5dDhphWDkB0LqrmtFDgtsGkP8aRhsQO5q3tuNRIoh7GUFVPk~ub7e2-M4cFzEFCjWXiWWBvcRytiRRjofE9uC81ABCKkzRltTIy3TPeXsxZDTr35UiDPh6luN5yA0~-xw~ajdep6IIGDHNXgIBZ8wSBidLfk4BBTz0fHxSftx9K6Mb324VDHY7PVDRAzWyk4eIml7rGbqgt4M44RZgRkXc4NVCflA6sK4PJY2ei8EZrf1uPmK48R7WJ1uTWQ25OZzzZWtycBcO9gGxhufXWYHgu7gGKBtwhYBkhmv0CKBtWnQn1a0A__"
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Cell Ranger 5.0.1 (Dec 16, 2020)
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Download for Linux 64-bit (tar.gz)File size: 955 MBmd5sum: 8b9d217c160d52902ebcde8608765119curlwgetcurl -o cellranger-5.0.1.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-5.0.1.tar.gz?Expires=1732302613&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=eXUA7GJ4SZAMLNc6SV6eTWyOfcoxjJmonhlP4LncWesb5slRO5VdR1orVlFfWhEWVetx4LSiUDIfzjD9phL1K-Erjdi91CYJxLFfq89aJGzcvtWfVc3vdDeFnYB3p8ENQYMTsWpLpvNnZ6B1xUy6aFIsVkdzys3hsS9iFO4CPzqoayREzSPO-owTq2uWmQWbChHWkj3WD7rH8UnazGsBC5RVkh~XsQYMa4XZ6q-pDScB9~8VcMRcVpliJhn8F~5REyqBZGmsH3UmCPhylnCdDNzV7H5coL3vL6q1rqwh3HW9RwBlGeXTF5pqsVCz-5knZjLj26gA6aE-Ndlc4qiy2A__"
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Cell Ranger 4.0.0 (Jul 7, 2020)
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Download for Linux 64-bit (tar.gz)File size: 972 MBmd5sum: cc4ed44a57570f6ecb3ea5881e01511dcurlwgetcurl -o cellranger-4.0.0.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-4.0.0.tar.gz?Expires=1732302613&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=K577zwpGdiedyunM0eDi4XA8V9r70IR0Pzfxhk9MlBe87Fds6VV3W-8fK532YqICU9i1vCRivO0yrpPipYQatIJ8sQ31~vwYg91JC1lf7dmYt0ra64ypDHKQElNGEd4YbhupI39aXeErWFMFUrBmXsRMiMlvXJt~hOizQzawg4nVDyL2E6izayUm2uw4E3NjWXrPkmpktmZ~0xx8PwulehRGJ18gFEf-L0dwYZsILRKvywZkBq~T9dgVdFXxgMpphR9rXPbssjP92LDP7kfF~P-buNFQQnktiiPNntxoYiboFa9PIkNoogdKdPFOzzfad2JeTe3FQEKMCN~WbbYrbg__"
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Cell Ranger 3.1.0 (Jul 24, 2019)
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Download for Linux 64-bit (tar.gz)File size: 1.1 GBmd5sum: a362d62530e9d6a653e5bad5b9c19abacurlwgetcurl -o cellranger-3.1.0.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-3.1.0.tar.gz?Expires=1732302613&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=AeYqaznW0BtnguvbuXHc1G-L8GIzWiQrT6ACT7vuZPgrznilw0OYZ3tRWe2RrNqts1zXs~6UsIPhfNwRETRQaTlu~Zl4Uew1KqgIhaiJWKVzEtjUKbyw2DpEiN4r24R-tcVdT90x0P86jxOESqIjr47lVlqmRgnKnBFGFLvB3gFBfApdS5srP32BKyaMCaqfIxceo7lbbHc-I0W3~H3VusEX9G-4IXyCIC96-xzcHanZMqcOBlJ4K6LtrXrT61ijMAOFsb0wlloTtuhdyvWjaus-gwg7IYiZ1HbDMxJKNqRcIznLcYNWa4rBJpdxRBnckjIvRo0iyEuIJGOzwRB5Yg__"
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Cell Ranger 3.0.2 (Jan 15, 2019)
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Download for Linux 64-bit (tar.gz)File size: 955 MBmd5sum: 73f3766579e800015f82daedb388fcd3curlwgetcurl -o cellranger-3.0.2.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-3.0.2.tar.gz?Expires=1732302613&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=RHI5ZsIRP-N2drIf5ovChbpiazTJoTADuPo8SrCBSn339f0P-ApNu5WXPkJehF7B8zH7FO105MlykwYyxZkbleAmhMvLg-A7lOVnBvmR8MfShBccq5UfPkdRy7C0bcLsgSlaaMJzjJPukWv7LF~4mPeav26ZRmVHln-y3ucAVGhoaPRsEWDP6plmWxujo4f~YEdqfl~Oolt5lyAyjZNLn3swCkRAIy8LQ2vkjntD6n5mac45Rcd7Lw8DMqCmNJzXJ-vmtoKXBOhy6AsB5K-CpqPyCI4x~FFfPHUIMQ5esjOFTr3cSuwlS5mojns7O1xSVXhdlZaIIYuSinokAnHbyw__"
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Cell Ranger 2.2.0 (Jul 31, 2018)
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Download for Linux 64-bit (tar.gz)File size: 663 MBmd5sum: 021a7c0059c17b29be79f5f10d7017e7curlwgetcurl -o cellranger-2.2.0.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-2.2.0.tar.gz?Expires=1732302613&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=XPOtpBuJgCIplYKriwdT5hIuC5LxRkL9uk-HgMTVn~Hxaa~MP3msM7yPHCRznMJfGurCKibhl4E8xTlfHniBEcCJ8HqIxDJUgAGgg1H9XvAbSRxq-TTiMQKamUo8AdzPMRm~eg8Hb0RGoxb5zgfMSGYnVMjdMgU4VM5Ea6ukXK1~Ubrp2qNFdeSk0i7TSPIk5fv3uWH9q1xT4fod9AcI2LDqlHU9cQg1V48lZzuGhSPYifDJpjH9JI3irQ~jOVSH0ZWw7Ef3mPI8Nne6IqXs1cHqDdLrK~NBGQFLEP8y4yuIADlfqfv-YcuhsWFl7DTfoDTwuj~IM4dUPYLjKRF~7g__"
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Cell Ranger 2.1.1 (Feb 26, 2018)
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Download for Linux 64-bit (tar.gz)File size: 683 MBmd5sum: 52ee46d3cef8d48b17953d6df27aeaa4curlwgetcurl -o cellranger-2.1.1.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-2.1.1.tar.gz?Expires=1732302613&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=iCU1vnlPTkpY8qUvWQTLtEf2VKiFeQ9MsDgJnzfZg0Dyy7zvXIwEBwEsSvknrriJVYzXKKdehas1yGvCQStDoYRwYNcqb5sSulzzaHNKB0bxO-r-guOS1jx90jkIflE7MSJGpmGfNouxeLf51K5t9yyoBQy6eG7-RSqCtuE-svGEZpB1ZCPTK0bVX5bi99PIM0FMaRvVdW123-s25a0nJTCi6796CIQfY4hFIWllLEhUr5o3r6DpXxG9mY1zUNjJrnoJ9loNhOYmQOfmkwl~1eopjH3cFITQIrPlFw955Oxy4Oyg5EpF3gJJ7Q2x0DXEW8sFTnglCeYZHBWCF2eqbw__"
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Cell Ranger 2.0.2 (Sep 8, 2017)
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Download for Linux 64-bit (tar.gz)File size: 732 MBmd5sum: 4a2526e556f549fadba4a709819d5d05curlwgetcurl -o cellranger-2.0.2.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-2.0.2.tar.gz?Expires=1732302613&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=VOGnI18akSAI81dUCLfmGBumaH6a5iRwcBAre6PnbPHzqseSTlvZekXO2VoGlpIiMkYC-02-D4MP-O7bU6ooY~eO5~ohk7lFfmYBkgXoZZf~HuPKyp4GSTNFNc3gC-Dz3j2Nsmts5VwbixKYhUUk6ICn-YXjhI5qnC32ns-M5Ra273Q6ZFJKI-Tup4g-KZIcPQR4O5yNdNm4tT2K9p3w2p8BJqlKjAzhAz9l1KTkKGsg5qMaQxBSb2CVU7Q6qx3FRbjKbvMkYom0kRAkfEYEHXOwYkID9Ijz9HrAVBUjK4pbrBP-iwGTssrJBQ2fC626wwxRrUJ6QKZ8EOO-H6gd5Q__"
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Cell Ranger 1.3.1 (Feb 20, 2017)
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Download for Linux 64-bit (tar.gz)File size: 717 MBmd5sum: 524bb6a17ad10e242cd294678f4cf7d0curlwgetcurl -o cellranger-1.3.1.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-1.3.1.tar.gz?Expires=1732302613&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=HBHN2fBLluIFrzdaBcuAxf9QI59c6wk2FD3EtBqw4hHf1YcIHBwTYKBDYpIh65nrUe-w2OIpFX07B1t8SK6JkDzPI0mhSUFY9jaJQZs8n50GeLmJ62R23Vi2kbSoFek3wuX5aEsZGu9CVuELb~9SlFp31zwxCvWApMqOyAUWFPHZsYGOW8U9mzl-HZ7UF32ZGyxma5u1nJmACmUqDxmvmTjDZmYRfhKGFBO2Y9~fTqZwZb6ceVfHZNC1Y0GbLOZ4m-dgaQj04NoRDKtybHvng2O--W08AE6sjCRDvI~H-CcjzTWZFeZboVE5OnGkAhvQq8vq-Gn6BLLSse~urrJwrg__"
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Cell Ranger 1.2.1 (Dec 16, 2016)
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Download for Linux 64-bit (tar.gz)File size: 712 MBmd5sum: 889dc2908aff03e2a0430786e5c09f45curlwgetcurl -o cellranger-1.2.1.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-1.2.1.tar.gz?Expires=1732302613&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=FjmvjXZLLMKplykLJ3K-dIouEwW5EsQx~-BV2R1s1G1MD~d6qJeVSj~GYgGMU2WC2Tyqw6V5ToIpVsrPGZB7uoK5hIqiqw6ri11x~S8wMvC4Vm~dXBv7-UVZVgqVEm5XGKcQzZmHjYq9vVYuOX1HRzTQdS0oHcCl~-LsKoHd2lU9MPzv0~jfw~SKZuFdG1apCWQ4XsHtjW34ngSmiAFuYisjG~txUjO45lAADW9fpKRud-QJpkuGcroLotVdVDJmGY2~9yNhB9TSZBRvl~e6PRwpfdGAZ1fZRHNVJ0qFqLsYsx0FkB3eMTALAPMPQ9x1meTwOFn66odQANrRPgB98A__"
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Cell Ranger 1.1.0 (May 26, 2016)
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Download for Linux 64-bit (tar.gz)File size: 395 MBmd5sum: 9bdf639cd135bb991267683f21469b4ccurlwgetcurl -o cellranger-1.1.0.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-1.1.0.tar.gz?Expires=1732302613&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Ci67gNf-Zu0PwydAuFevdc8EXrPqG4Qd2rhY7TNj7uepeVu6ek~b7b8tVEJ6m7KZkAA5M7iReepTWflGynoAdHYC9kWygDg-lUAlfvWand1TESFwgGJO1vLnLtalrfuE2if9eBVCAAZYpdfMTNPIMiYsnc2ny7E0lwn2vdXreKe3jifNRGXbw4AAfvTg2~AF8-z59Rdmd7OfF22LkgJOh~ft0X4EnW6oaHOPMJ6VU-dN6zB5N9xmvYdUAfHgUZmzfB8FTN-ycSy2IQYJanRMqbEVt3-asOedqiD7t9kDK8yR0I1KgAhK1DlVD7XEsA3G0yHoADcV9Zvxx-HrYXiW2Q__"
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Cell Ranger 1.0.1 (Apr 25, 2016)
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