Previous Versions
Cell Ranger 8.0.1 (May 15, 2024)
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Download for Linux 64-bit (tar.gz)File size: 702 MBmd5sum: 1d08d8005b026fc1ca3c867bc67b2dbdcurlwgetcurl -o cellranger-8.0.1.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-8.0.1.tar.gz?Expires=1737246406&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=bCadBuRVGMs5cnqbtNtlJ6aBkbNhkNnnS5bvcu05~MoOibacc74jmJkqcdZwMyJI64zYkOjy2BaGk1P2pkp-owLVfoq0S8KRSG~dVJkdjddYYfzs~MEO9As01BFEh6x9sS9rXg51CiMOCKIV1UCrf1o357IaC~L80TrmW-PnkXMPAqY~8B4yb80Zjdrzn3eUBQC4473NzMJMBwhQvOBgi2k7DIzDgMzDaGqJns6NbrZWTTF~5t9QzrWaO6DnHba4R4F03~s68FcrqrW4ej3Ih-skNgkpqU~~4Tec9nUUVYEzkgkiX12m-Q5K4S9ssavrZ7SOmsg48XbLcp4zWaAYgQ__"tar.xz compression
Download for Linux 64-bit (tar.xz)File size: 453 MBmd5sum: 5d112b68f8819d50e54a9f3809cf5533curlwgetcurl -o cellranger-8.0.1.tar.xz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-8.0.1.tar.xz?Expires=1737246406&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=TpFnqYnjiX8JbNgYPUgJKbP9GeF1RRwgPDa7i3NwZ9YCiqDgb4GKDllwzcs~Sz2M~H88IixXMXx-EXNveFc--3n4bc2~-YUGMVVfWxJleYFCbDkjQLLd4IUltsRGWdDLUeqQJXK4Etnbj7osViZf7R1PPjPfcEs4BUaoHxiHW05Js-eK67z-Q1yR-W8p9LNXJsiV8ADXFUAhuxMIXnPzEw4501woWSPxiTzHGMU-TixPlXgsi9-FxRpH-GorWhJd8NW8mNK4T2LftCMpaH5PcfMD5qg5m35KOXFMHjpjvkKh-SY0ESkwYR0lNBhxQms-dDlPlgrwMl8ZdpX9cELcvw__"
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Cell Ranger 8.0.1 highlights
- New feature: Supports the analysis of Chromium GEM-X Single Cell Gene Expression v4 and Chromium GEM-X Single Cell Immune Profiling v3 libraries
- Support for Low Throughput (LT) libraries has been disabled
- v8.0.1 fixes bugs and introduces a new optional parameter (min-crispr-umi) to customize the minimum number of CRISPR guide RNA UMIs for protospacer detection
Cell Ranger 7.2.0 (Sep 13, 2023)
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Download for Linux 64-bit (tar.gz)File size: 653 MBmd5sum: 85e2573e80a6f8656a42ff09460463e6curlwgetcurl -o cellranger-7.2.0.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-7.2.0.tar.gz?Expires=1737246406&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=GCQlceZ1clDsHoQpY9DSEeYpcA09us-GpIUKyM0JyqmDXAVUaspwNWy56~udPjU1gTWMZsu67zTIIY~JD4WLyuKMPMGE0CToMd-kS-PpDNDWF5oSqxque882DxLf0IkiJGCth~R3RawKkl7kkBfPlrEOmjNeQ4ztawu5cajt-tcJQxMDVjX~1PTCNqlrsqsTDx~Qu51qTnhUnL8oJI~ZYbZPil3mRt6dYhUMtVV47DQjUFVyD7MX3X2MxL2pjyrsu~ktt0ZJvtDn7GGurSe-z6t5yzmC2-0LWihuTZ8Q05mqbTNksuyyhdaU3evgYsWNcxbiGq-YBo8XcFk9XrdHQg__"tar.xz compression
Download for Linux 64-bit (tar.xz)File size: 436 MBmd5sum: 64f2c8c813dbdc030a80ad59096dc9a2curlwgetcurl -o cellranger-7.2.0.tar.xz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-7.2.0.tar.xz?Expires=1737246406&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=FV9ZEAwe7Tvh4o4gfGsgJOv4UU8zw8l3uTFCTkYViNfcuXHav7BBz6r08g-xFXN0kwDkNakqceluukh64zjj8T9six8J4VQTddqSnMG10fTC-xIg6~nvb7gzD4NtCLpoupbGjkANXmXO56NRNDf4pPDTKza66IpwTvETheBZTQMI9Wrqrbk~3yLxdHjFlztOIBIDYIr9ovBVhquxnv-Rm2ncQMWcbjaYeeBFCkuZDFjR03PRCj9j1OAYmcWFRJysxxW6Nky1H0CRiFBxactaJji4Y1Lahg6EmQTX7wKuoy8icDRFOa2vI7J6iSGwsH-m5wQe9Phdfg4WDI2OZ8mMIA__"
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Cell Ranger 7.2.0 highlights
- New feature: Supports the analysis of Multiplexed Gene Expression with Antibody Capture (Cell Surface Protein)
- New feature: Supports the aggregation of BEAM (Antigen Capture) libraries with cellranger aggr
- Several improvements to the web summary output files generated by cellranger multi and aggr pipelines
Cell Ranger 7.1.0 (Dec 7, 2022)
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Download for Linux 64-bit (tar.gz)File size: 639 MBmd5sum: 0938af789631800b20176527063c029acurlwgetcurl -o cellranger-7.1.0.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-7.1.0.tar.gz?Expires=1737246406&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=oH9VfbPdUo7WXQYbZXr6tisRMzj09uxXxUyMHdjZ8PDdaQHicnhvfYHzfi2gfqi-ETSc5PbCQ90z6FIWiMzw9yftMFldiOWaB~auK4XnbYGq3qSuzuyZH40S5DvedFwcFq1-g7FXH99OTKiPV~5pMMzscoiTtcdPSzRG-UEVjU9VMww3lCsHy7mnuFbLG7UCMnarmTLluyVJumYZzQE1U~S1LonSGTXkhvqDxV2gnj4fXzw-4P4McGWY0GOmD7xqHzY1AR7Aqtid34S2wK3qZWtF55-QMB5Rf1BxHThJyPrtQT0yfSl3p-7Xghff4syC9lGWg-tdw8W3lWjjVha2KQ__"tar.xz compression
Download for Linux 64-bit (tar.xz)File size: 379 MBmd5sum: 1b90a1b0a785c34ecd5ed9227f72f78fcurlwgetcurl -o cellranger-7.1.0.tar.xz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-7.1.0.tar.gz?Expires=1737246406&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=oH9VfbPdUo7WXQYbZXr6tisRMzj09uxXxUyMHdjZ8PDdaQHicnhvfYHzfi2gfqi-ETSc5PbCQ90z6FIWiMzw9yftMFldiOWaB~auK4XnbYGq3qSuzuyZH40S5DvedFwcFq1-g7FXH99OTKiPV~5pMMzscoiTtcdPSzRG-UEVjU9VMww3lCsHy7mnuFbLG7UCMnarmTLluyVJumYZzQE1U~S1LonSGTXkhvqDxV2gnj4fXzw-4P4McGWY0GOmD7xqHzY1AR7Aqtid34S2wK3qZWtF55-QMB5Rf1BxHThJyPrtQT0yfSl3p-7Xghff4syC9lGWg-tdw8W3lWjjVha2KQ__"
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Cell Ranger 7.0.0 (Aug 18, 2022)
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Download for Linux 64-bit (tar.gz)File size: 600 MBmd5sum: 98ffff631adb7298d38194073626817fcurlwgetcurl -o cellranger-7.0.0.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-7.0.0.tar.gz?Expires=1737246406&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=dltGO1AE2PZdUy~TDYExLV-ZAdwQ4xL51DdwYdJMuh2UrMfB9EcK2mQUQSE3iiNdL7931QbniCLmFK2PmewH0rgiX8Y6GU-SoFNVk1reRX~sNJaKchBW0ZSLstjNdX2SNiFsl~sBbIkB~0EggzqFGE8L9ngsFwdvAVKsFIRGHsdh~9~LAf6mRzCrKtL9U0RlwZ4W4IAjso0yRYWUmFnA12svasHyiysRBADX0Q7~FXPes-C9Qscquk~n3~Nybn0qTNnS3TkMeskKOqOcb8O5HlPo1EsIXmBi-n8LydGBX6X6Mf8tHg4s55m6shD2ZorJmsZkf~cy6SZTs7ifLQvftg__"
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Cell Ranger 6.1.2 (Oct 25, 2021)
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Download for Linux 64-bit (tar.gz)File size: 768 MBmd5sum: 310d4453acacf0eec52e76aded14024ccurlwgetcurl -o cellranger-6.1.2.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-6.1.2.tar.gz?Expires=1737246406&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=jMXdFMM~i7g-UB1ULX7UgxDjrpFxSMEGLySh~SVRnD82mDi2XeQ2dbz1wBENMxjJGNx14LN7yWZJBjO~-lRYe6VgrssHP7Xz0-jjh1mGAQTky4xF5FpJ~RfxIxBAJmiK1VHFS3QZ8N3ujQUt4J6KLEZpksFNIZi7eajw1iVk81O-qcouZfI4CUYBhs3-UGyGi3CPQTDs6RJk~8QIBEyDQNfnYle9~nUUBWgi0rHgCDtXcW2incK01MihlaECftc0Ae9ITAdkQLoDKKUotbsV-9GMHBObZCEGDmLeCfTpsROyl3Jiio6D2WaUbTB1NT5n1eQ-gEAI3pJK79LlJM5Bcg__"
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Cell Ranger 6.0.2 (Jun 21, 2021)
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Download for Linux 64-bit (tar.gz)File size: 1.1 GBmd5sum: 5e98504fcccd3e7257c167f0fea399facurlwgetcurl -o cellranger-6.0.2.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-6.0.2.tar.gz?Expires=1737246406&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=htE8Ye~7k86iIfxr~9IHAgeb7l2rgVD7~KrkOB79Tu9hIAA4Ym-ZMyVUXvwny32j-rIbATYT6oQTBnz7fUtrMAdl7eleklGdkQ-PaEUMSvL7JdQMjJIPH0ufkE8zEtfwAPyQhoATR4TTmoSJRTuNkHnZXM~ODLq4kOTLPl9XpUfFwXlR8jmmh2WkwfspRh2bdcc0dVH1fApLbPxT-VtstkGOTOuWTsOgZQlAtK-6W0OwPd4e7y1n8UTRHK95MyOa-gNQUD0M9BikCyQ6COhL91EsAZNasjnFF4ZNXYQyfQLAuLcWjtICR-z0ADkwKdHQTPeHLM5mLEKFS8AlbP7tYQ__"
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Cell Ranger 5.0.1 (Dec 16, 2020)
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Download for Linux 64-bit (tar.gz)File size: 955 MBmd5sum: 8b9d217c160d52902ebcde8608765119curlwgetcurl -o cellranger-5.0.1.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-5.0.1.tar.gz?Expires=1737246406&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=TuJtU4nsOpNeQr9yckSw9xVWbTEbN8ncYV25Gvn6vVdwGF~Yf0fHKXPX8m6Veb5jxIEU7QeRaeNYXFoXFg2ZYZQQGXSaASzX-UU7o6~KCxBhqLuLUIsS4jNRAMwq9d3Kgd1GNXqtYaxPyWlSe8fOyKvqicjwjOWxvoEYhbMupNFy1rxcI7gW~o989~xacv829cgL-LHQoykyGY-bAOHuF0MYBg0XWSki7dtWd8U8cC4ttNvJGwh6IUkAlb7Zh5C1ZR5e-orebacuAyxgYT7xe~59cUhMPoPSfuLpZM9N6cBD2aZZLWcGmazoA90R2z93lGDEsve7YQRN9mSVCBL0jw__"
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Cell Ranger 4.0.0 (Jul 7, 2020)
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Download for Linux 64-bit (tar.gz)File size: 972 MBmd5sum: cc4ed44a57570f6ecb3ea5881e01511dcurlwgetcurl -o cellranger-4.0.0.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-4.0.0.tar.gz?Expires=1737246406&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Tc9XB3YAxGE8PB5I3zYh21uyayHcYvsNCllX4v5p~A12ObNKHhcE0CFOoMec08LT3LMSPYXZI6eed3GAGdsXuE4gKDg2U198zIFK30J2p7ip~ls~K-qh6azJogRuK0j-2lh1tWp8Tz1d7IAofnQzGI8FnUtMeDwWbQWN-biKz5c7~o1W7xD2hkrfSSBtPoe5OHf8u4aFE3lxsDAM4lbVR~Y~e2iYPo7~FCefkl5zGGuoO1J0TV-3YrreJ4ZVHLeh3Gf0UxJmBxV6IHkmXkfOogg07pCh76LihvrSIAX0JEASG0-Kh9W6objtQa7yz5LDbWsbvfsjQrwzc01Lsl0abg__"
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Cell Ranger 3.1.0 (Jul 24, 2019)
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Download for Linux 64-bit (tar.gz)File size: 1.1 GBmd5sum: a362d62530e9d6a653e5bad5b9c19abacurlwgetcurl -o cellranger-3.1.0.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-3.1.0.tar.gz?Expires=1737246406&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=dHKcRsThQUFjFMepLcxA2ZK74xmWwmA5IoBuyQcJ5~FAnaEqxidvoiTFr200soVjpvDwRHQHcTaAAMjCwoApmReC1hOs5HVWV52bJbP~iRymDZWLj20roAgJHQELqPfu-V1U2~05UZt8OtU81ZO0i-BNN8hVUq-CDqsykJVWsjCk1-SNm9ozt72qZijsvxKzpoDxPLdz~RDHpNsqcCDmyvew0ESFpN8iiO9egbD11rCcA4UL~SqCpxMk~rJX1W536yUgdUQxUt-H6KiLqyECTShpRwqRSvI0UwtifX8VulYwrj4EgpVFFGfRLWatdMpQWMJUxD89zW8ACekKtbNIPg__"
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Cell Ranger 3.0.2 (Jan 15, 2019)
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Download for Linux 64-bit (tar.gz)File size: 955 MBmd5sum: 73f3766579e800015f82daedb388fcd3curlwgetcurl -o cellranger-3.0.2.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-3.0.2.tar.gz?Expires=1737246406&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=lcvTCjlDAcJqIvhuC~Zu55sFnRiTaNoUs10gZ0vBxuL3DI~~8ziTkn6maXiJ463AQYUcMRQmz2mWyEnbPRAVhPYxlgs2YfW7eB5r5v7-0Bscx5IVk74gHa3qUXfrzsSElplCPdYC385pTcwaDHatYAfnVoKX~pAsqsEezHWSHGxkN~~vZwGPnz2lN0iImQPV7hjiMfrOHnC2zwixdP9xCAVuNU34Ot4d~6lzrOgBOzRcWY4WU7SjDqrFof-7jfOteI5XAk0zNm5CZxJlPSQdhNG0UpkL9Vqzq2S1F4r5SG1mQ2ksHcXh3dMAE3jLOmLrMrsx5zUrBtpXiG8NstiezA__"
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Cell Ranger 2.2.0 (Jul 31, 2018)
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Download for Linux 64-bit (tar.gz)File size: 663 MBmd5sum: 021a7c0059c17b29be79f5f10d7017e7curlwgetcurl -o cellranger-2.2.0.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-2.2.0.tar.gz?Expires=1737246406&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=FaoznIDeaJX51tqf5X-gX~4DHGwTusA7n~QPhY5GISoUHCQ67EuxuaNKaQ5EdXx0hVdly1SkeRF1zk-1a1A013o8TR3TmsD7Oc996g48fjW5Leb3oVrNNlHSGuhH9C-Yo10hzCAH2~yTIXp~9le2xvCTfJ0ZujHBA9lsQlN~Q2OLrZBnaW7LJOXLlHNmpEZphQacWLzeE853ck4KFO~OzL2zGhpAcsP4jpK01LxAXgYGxrmKav~-pxS5IoX-1yMzsY1yqXo4KQ6U6qPqH-pIX3iFSi0JTFjKR5W~JwwTLxOjbjT0Ki24UwjR8dv8tQGXBXWAI8Lyr4FObXKpjaBRaw__"
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Cell Ranger 2.1.1 (Feb 26, 2018)
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Download for Linux 64-bit (tar.gz)File size: 683 MBmd5sum: 52ee46d3cef8d48b17953d6df27aeaa4curlwgetcurl -o cellranger-2.1.1.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-2.1.1.tar.gz?Expires=1737246406&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=R0zfqZUhVj6Cj4d8dMUXX4iCQoPUfS1JZ6CElsyEPmLe4CEFgrpD5s5FpN~bY0JCGaE3qv37NQqgrn8pgUt0Y8L0reWGZ7MeZsvnNgDsrjdsaIhy9E8cBmJfC5t~zs4kaIT-6h6zuh8dv4cw~Qi5LD9AnBRvx2fCy-CZmleRqx6d2Ly5FYLrmT3jgEfz5XiOIkkChIoQxeUKFZslCMzWxOv3HIepaX0FdK2JjCrW9CbNsY5ZzuSo4nXBcsOqx3kXvqt8LEuotfA6SUoA0yNdfUqjq6L~ZN-SuaToHmkqg4g8UHSNRRxz5sfzKaxPNiyTslsxVZtQ0FxIh0vKq57S3A__"
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Cell Ranger 2.0.2 (Sep 8, 2017)
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Download for Linux 64-bit (tar.gz)File size: 732 MBmd5sum: 4a2526e556f549fadba4a709819d5d05curlwgetcurl -o cellranger-2.0.2.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-2.0.2.tar.gz?Expires=1737246406&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=SWsnXN4m6adTZ~~f0eZEvUmK-j5HlU3gdZ0~YqiOyPqc4VLFrReHyNwVQVSOP-OBTdO6KjC2xeA79DIN3EOhn5BFrPKei1oeHgqvGt647OtC38fB4STj~bfv7v-A~RkcKwW4esU7QZ80wUHgcf8RwdFvfDUvTijVVQ9ve1n5sBo1jptpSJB4Q8t06fq58M53Pt9ACpWkYYA1~8TykNl1DeC3jdb7Yks6VSlXS3-U3pc~5GQEXknCw4reAkM-rQnJ~8-DW2uDnnQMHHfnGV0VSov7B1P7cREJkr5KvPfR7rQAqsif0YZOkRBwPDvni3tPuesS2PIWdAioNGyOldbt9w__"
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Cell Ranger 1.3.1 (Feb 20, 2017)
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Download for Linux 64-bit (tar.gz)File size: 717 MBmd5sum: 524bb6a17ad10e242cd294678f4cf7d0curlwgetcurl -o cellranger-1.3.1.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-1.3.1.tar.gz?Expires=1737246406&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=ZEhgrBSOeJSW0fcrKnV3oGb7Ix5c6zXEzAus9W1RQDtuCsnEV7rZwD-eGjYecAauFDCfqIR16F8DzfCSKubBId6blNtaxWua0LywwCkugz8YS3rwz5IYHLlHnIgIop8Z9TBqZZr5nPtn1GcAhiS5SVNRhjr9nacdt1tMZBBOTWKGixICzqajxz3Y~U86UG-GH3-MFepe7paWUQDX0I4af71iJIUK74BZ5M6roeGJMfPFGBvDRiilU8PSpf1mif3JonKfREp4SVCMnRuYWp6dXddBaa-x24Vqgxm1r0JCNGTm8V5egVQ64QNLs4KcmS4XHFWX9p~7dZqkYjG5YZiEaw__"
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Cell Ranger 1.2.1 (Dec 16, 2016)
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Download for Linux 64-bit (tar.gz)File size: 712 MBmd5sum: 889dc2908aff03e2a0430786e5c09f45curlwgetcurl -o cellranger-1.2.1.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-1.2.1.tar.gz?Expires=1737246406&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=bAMXVyqfrwlUghkGKesQBPA7qEWXKBars-Z8AVj3SnpX2PZ~~p-7H2tdD2MvT7Mur82kDgT6HpZ1k-G6~v6JFX-D7O9ETyB-scQww~WgKkbVVu7DD1OE5f~KnCBVRG6aYkU54JuVyBXwHez2iTXjlrSrUQhw6vl8wgkMIzgfsOYXVvGP~wLvI8pLIyf5RZI48c4U325xIFUUaQxOpGCRl66YBP1c0cD-DZJfXIoVYDZWhyOp4hRNrTSy5e39o6dL33pPRcmwAqSenrWm-2jKrqXj7ePFbebMs6fo0HHG~VCWZqr0J0J9bmALopSGxLb5b3K1YagFQ9SVqqbAUmqlig__"
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Cell Ranger 1.1.0 (May 26, 2016)
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Download for Linux 64-bit (tar.gz)File size: 395 MBmd5sum: 9bdf639cd135bb991267683f21469b4ccurlwgetcurl -o cellranger-1.1.0.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-1.1.0.tar.gz?Expires=1737246406&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=dPO9IRKPJ1FtJSIgCBAkaa~hza6LZjfVm~YuC6ht0iRYQXqo4HUL-48O768M4L9AMgk8DbO9NVMuxbACoWufaZDjFCeHeearlBfiZGNbYiOAUfChMZq4acbOJIGNP4Kc5BovIf3zaDdTHLc13OZqy34Hzc0yqhKclX0irNbEZEwzItkabyH5MM5JaPPluJfYNvJ~STgA1RwvW5pJADUY4QbpUK79IAnrLbaYvABWO~JxdWr6vu1q07KphJhxLVrsxgJms4pAZWxT2cO5uTi8du~vjV3kwKJfaghvz4ipp7G6tl9XJvHDrcbXMPAHYrlQzga-Hyb4SQ4daveouD4~pQ__"
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Cell Ranger 1.0.1 (Apr 25, 2016)
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