Get oriented with the Spatial mouse brain tutorial dataset and learn about sharing usage data

Learn how to navigate the Loupe Browser interface with a pre-loaded mouse brain dataset

Evaluate the expression profiles of known gene markers of interest in the context of tissue morphology using Loupe Browser

For fluorescence images, or when fiducial markers are obstructed or tissue boundaries are unclear

For shape or stain mismatches with the Visium CytAssist instrument

Evaluating image data and clustering in the spatial view with Loupe Browser

Find subgroups within the clusters and perform differential gene expression with Loupe Browser

Interactive filtering and reclustering workflow for spatial datasets

Share a dataset with colleagues

Learn how to use protein expression to filter and visualize your data

Learn how to perform reference-free spot deconvolution using a public mouse brain dataset