Cell Ranger ARC

Simultaneously profile gene expression and open chromatin from the same cell with Chromium Single Cell Multiome ATAC + Gene Expression. Multiply your power of discovery to characterize cell types and states, and uncover gene regulatory programs.

Single Cell Multiome ATAC + Gene Expression

Analyze Single Cell Multiome ATAC + Gene Expression data with a set of free, easy-to-use pipelines for primary and secondary analyses.

Cell Ranger ATAC

Chromium Single Cell ATAC (Assay for Transposase Accessible Chromatin) allows you to analyze chromatin accessibility at the single cell level, providing insights into cell types and states, and deeper understanding of gene regulatory mechanisms. 

Single Cell ATAC

Analyze Single Cell ATAC data for identification of open chromatin regions, motif annotation, and differential accessibility analysis.

Cell Ranger DNA

Cell Ranger VDJ

Chromium Single Cell Immune Profiling provides a multiomic solution to your immunology questions. Analyze full-length V(D)J sequences for paired B-cell or T-cell receptors, cell surface protein expression, antigen specificity, and/or CRISPR edits, along with gene expression, all from a single cell.

Single Cell Immune Profiling

Analyze single cell gene expression and V(D)J transcripts and clonotypes for T and B cells.

Cell Ranger

Chromium Single Cell Gene Expression provides single cell transcriptome 3' gene expression and multiomic capabilities to profile tens of thousands of cells. Explore cellular heterogeneity, novel targets, and biomarkers with combined gene expression, cell surface protein expression, or CRISPR edits in each cell.

Single Cell Gene Expression

Profile a defined set of transcripts from single cells or tissue sections with Targeted Gene Expression. Reduce costs while increasing the number of samples, or increasing sequencing depth with customizable, comprehensive gene panels.

Targeted Gene Expression

Analyze single cell gene expression data with a set of free, easy-to-use analysis pipelines.

10x Genomics Cloud Analysis is a platform for data management, analysis, and collaboration to streamline and accelerate the interpretation of data generated from 10x Genomics assays.

Cloud Analysis

Analyze 10x Genomics data quickly and securely in the cloud.

Custom Panel Designer

Build fully custom Targeted Gene Expression panels or customize pre-designed panels.

Long Ranger

Loupe Browser is a powerful visualization software that provides intuitive analysis functionality you need to explore your 10x Genomics data. This easy-to-use desktop application for Windows and MacOS is available at no cost, enabling anyone to uncover biological insights from their data.

Loupe Browser

Visium Spatial Gene Expression is a next-generation molecular profiling solution for classifying tissue based on total mRNA. Map the whole transcriptome with morphological context in FFPE or fresh frozen tissues to discover novel insights into normal development, disease pathology, and clinical translational research.

Spatial Gene Expression

Explore 10x Genomics data with our powerful visualization software. Compatible with single cell and spatial products.

Loupe V(D)J Browser

Investigate clonotypes and examine V(D)J transcripts in Single Cell Immune Profiling data with this interactive visualization tool.

Space Ranger

Analyze your Visium Spatial Gene Expression data with brightfield and fluorescence microscope images.

Supernova

Explore Xenium In Situ data from the tissue scale down to subcellular resolution with our interactive visualization tool.

Xenium Explorer

Xenium Onboard Analysis

Our diverse panel menu of pre-validated biologically relevant targets can be customized with up to 100 additional targets. Standalone custom panels can also be designed for your specific research questions.

In Situ Gene Expression

Details about the algorithms and output files generated by the Xenium Onboard Analysis pipeline.

Xenium Panel Designer

Submit custom panel requests in the cloud.

Xenium Ranger

Analyze Xenium In Situ Gene Expression data with a set of easy-to-use analysis pipelines.

Plan ahead by referring to the list of equipment, kits, and reagents needed for Single Cell Gene Expression Flex.

Experimental Design

Experimental Design & Planning

Prepare single cell/nuclei suspension from fresh samples for fixation or from archived samples by following our Demonstrated Protocols.

Sample Prep

Find a list of probes targeting protein-coding genes in human and mouse transcriptomes for the Single Cell Gene Expression Flex assay.

Probe Sets

Construct a sequencing-ready single cell library by following our step-by-step User Guide / Protocol.

Software Analysis