Previous Versions
Cell Ranger 8.0.1 (May 15, 2024)
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Download for Linux 64-bit (tar.gz)File size: 702 MBmd5sum: 1d08d8005b026fc1ca3c867bc67b2dbdcurlwgetcurl -o cellranger-8.0.1.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-8.0.1.tar.gz?Expires=1762328807&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=jS2gxRPeF5GncYysgOs-4YhBiwVHlSAp2iOa8jWwdcyc~81hxz5JgRWAuu9FuuQvOg3yOJpWHP9lQCXp-j6aBlDwVVCMvX~LDzITBj20AnmvjMc-IrbtlYeoYeWpihi~WwGvlZQHlOPTVlbEqcuuJcCJXyC5Iif7KqZ2NhK~tyqqScU9uuFhqCA6Pt~ob-i6Oc8gVeVrDp~dL6ASw4vg0o4ndCjY4q-cVSULSm2tGFqPvcTtB2O7k6I5M--tuK-8MslDtnvMLc9RKwEWdM~bzZKy1bxXGRBaOVTGs0o8UsjZHnjagnBibBZpXEjLPE0pwlsye4ck-2-r54oHaFkysQ__"tar.xz compression
Download for Linux 64-bit (tar.xz)File size: 453 MBmd5sum: 5d112b68f8819d50e54a9f3809cf5533curlwgetcurl -o cellranger-8.0.1.tar.xz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-8.0.1.tar.xz?Expires=1762328807&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=J08h~G4F5~7Ao52hy2xmg0tdtfIWJ6ofspstKChNLHU1yeEnvx30jTZ2Jp~SjChEnkgUH3VaAksRGMron1u6QRNx6~p~kFotYOjvpi42tzi9oB0h~qjGwq7xxqp-GbZKNI~Ap3GhNeE375FtzpvoPqoruAOQ5Snv7aaHsFTbAdHvvhUvVAoeTC9Ihv0qBSP2zmGZwLAh~F0knBqcsxaBobTeeaIpjTEMbSo736I1DTb8KDZlNBkY5IfpSxdU2pf-XsuNUiCW8UKM8bDkWXuoOiNXF-JpekTzhqOvWf6XWK49c~it8MvSsZFUHp49YsPFb6T9p7Mi3ezmhrJOXJVNDQ__"
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Cell Ranger 8.0.1 highlights
- New feature: Supports the analysis of Chromium GEM-X Single Cell Gene Expression v4 and Chromium GEM-X Single Cell Immune Profiling v3 libraries
- Support for Low Throughput (LT) libraries has been disabled
- v8.0.1 fixes bugs and introduces a new optional parameter (min-crispr-umi) to customize the minimum number of CRISPR guide RNA UMIs for protospacer detection
Cell Ranger 7.2.0 (Sep 13, 2023)
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Download for Linux 64-bit (tar.gz)File size: 653 MBmd5sum: 85e2573e80a6f8656a42ff09460463e6curlwgetcurl -o cellranger-7.2.0.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-7.2.0.tar.gz?Expires=1762328807&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=MJThc22Y8jmMDDRzbADWfOY-84O3tH7q11npS6LUXemmr9DSojcs5CvjFw5wuxYeSIAP4wThBGR3CbKJmNhOBiagG1aso5GITN0nOVA1zjr-VT229lV5V~elB508XU1sgxNbbgQj0KXcfFPWSdvB6tJwSiUR4dCnNSS3Q8HK-2WPmCNg5fPg3x72-f5YH5hlBnMEPiTvmOYu3I0e~134gIZeDK9wk3P~dkoUDRgnQuBkl5RM2WdNIPT0bRoMIXLg5chaxyQgYr-~5E5WQi0y5uMXbmxx3ntjPiwkEhZ4alhFpTxKFz3aoeoQoV28aNrtUo97AkrpuhMZZF6YW-lX-g__"tar.xz compression
Download for Linux 64-bit (tar.xz)File size: 436 MBmd5sum: 64f2c8c813dbdc030a80ad59096dc9a2curlwgetcurl -o cellranger-7.2.0.tar.xz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-7.2.0.tar.xz?Expires=1762328807&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=LH8o57c4gCBjzM8Y02f1msHnoXWg~Mw5YkUrdrodEHMHgodR-up96j7DXN2UxF9LPsHUV0GVlTAXp8YKiBmB7Jkh38zwE5eMqNgtBKa~NJUM-Jpl4MONzQs3TmbxCkIQyZybbaYQnN40fC5P2DZAQVuCFgBKqDHEICGwxRZaKKErYlMhkcpPOZxv3Pr8iE2Ize78xHRfwkIixRHr2q~NBZ1VwdX7EqXGOFUEtE3KbAkFU42~sdYxhcDMzPzMPamMRfwLM1lmyHh3ksveXvogIS9I~MIbNyTUni6Bs0AvHg5zJve7Or1YkNDgwLjvYJlvxvqH7Vn0mfBPgz9CTcuX0A__"
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Cell Ranger 7.2.0 highlights
- New feature: Supports the analysis of Multiplexed Gene Expression with Antibody Capture (Cell Surface Protein)
- New feature: Supports the aggregation of BEAM (Antigen Capture) libraries with cellranger aggr
- Several improvements to the web summary output files generated by cellranger multi and aggr pipelines
Cell Ranger 7.1.0 (Dec 7, 2022)
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Download for Linux 64-bit (tar.gz)File size: 639 MBmd5sum: 0938af789631800b20176527063c029acurlwgetcurl -o cellranger-7.1.0.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-7.1.0.tar.gz?Expires=1762328807&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=hWawPuAsUDot629gzIFFdLGnve9NpRFQ3YSGqeAWGGldERYT8C9oRWdJsDEQyFhTNOdJteNmJMLpVDcXrCAwVocitJEtXPzyHrUFae0eQDgpytMVWwWiWF2jURxcW7J1kmuKzKmfE0fIdMZrGpPSUGcfYWX-5zZmUsq2mY8JPKafv-iAaMwXf82U6ItYQQZfyRmNjlqZ~HTFe8ISN3-fUP5XGpMpwIphE6DwdZGp9osg3MuAvm4vYdYLp06Vqobii~jLNHgOVXoS74zD2IoTy950Nif~Blrq7tw18BxiSHjUmy9tbgAc7wABEZafKwng5ipLIoH79C9Po87GnB56wQ__"tar.xz compression
Download for Linux 64-bit (tar.xz)File size: 379 MBmd5sum: 1b90a1b0a785c34ecd5ed9227f72f78fcurlwgetcurl -o cellranger-7.1.0.tar.xz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-7.1.0.tar.gz?Expires=1762328807&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=hWawPuAsUDot629gzIFFdLGnve9NpRFQ3YSGqeAWGGldERYT8C9oRWdJsDEQyFhTNOdJteNmJMLpVDcXrCAwVocitJEtXPzyHrUFae0eQDgpytMVWwWiWF2jURxcW7J1kmuKzKmfE0fIdMZrGpPSUGcfYWX-5zZmUsq2mY8JPKafv-iAaMwXf82U6ItYQQZfyRmNjlqZ~HTFe8ISN3-fUP5XGpMpwIphE6DwdZGp9osg3MuAvm4vYdYLp06Vqobii~jLNHgOVXoS74zD2IoTy950Nif~Blrq7tw18BxiSHjUmy9tbgAc7wABEZafKwng5ipLIoH79C9Po87GnB56wQ__"
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Cell Ranger 7.0.0 (Aug 18, 2022)
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Download for Linux 64-bit (tar.gz)File size: 600 MBmd5sum: 98ffff631adb7298d38194073626817fcurlwgetcurl -o cellranger-7.0.0.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-7.0.0.tar.gz?Expires=1762328807&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=X2MQRIRQK80E99EtLMJ8C0nyp2cOxrRzbWMNm8gJVdvuJISzA8thGNuGW7RRARHVrdBi73DElpgjkbQyuZn5EoteIxsHxWRL~0152WHJFQ~RGDvVSP3whzYwNYn0jr2OqOJlXsHS5mRo1Xz7RiyvdnfwTs-eKCPYUtIhPwiiFSXCNtNnd168YWeKSguNZCyzUz9Id~UB31dnWV1SxYlQHuFpLiePVoWJj13datBkb3GymAQ1e61vE4QVMMgQY~a4bQi5LZBRW4phkOEb-wqWpKqhW9i3MAAlCrnTS4jJj8j1Us5PdH1TO6CH5lCs-~I~Z2rjQmJXctxtdpXQ3~Awcg__"
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Cell Ranger 6.1.2 (Oct 25, 2021)
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Download for Linux 64-bit (tar.gz)File size: 768 MBmd5sum: 310d4453acacf0eec52e76aded14024ccurlwgetcurl -o cellranger-6.1.2.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-6.1.2.tar.gz?Expires=1762328807&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=RbBlpvRN~HKinFR38yVN~9HFdnf~qSe2BFlv~9QMPrI3KHAUH3l4THYGXl8cRjVgAFBqHXBdOq2JErb7hIpth9D3e-8pOVzDrocNREhOFnEvl6vob3HmR0DNbnI~WPRhnUVfA0~4RqrDy9GZfsOJPpz69~sgfPYP8lOWfSNP2V~OnYAlIH~wEfFoCbEkK35OIkkZLuQ-craztC4R-MqChVFgjeSVKZVeqECZhi9fwe7lf-0mhjcnEpuRdSYPgdbKetJ0qKdn3yqmynV6H11iaaK~pVTIftjUr8ineY5~HiPHMKjIxiFbG70f8lK10~mQAImZsOj4DKSK95ym-IlLtA__"
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Cell Ranger 6.0.2 (Jun 21, 2021)
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Download for Linux 64-bit (tar.gz)File size: 1.1 GBmd5sum: 5e98504fcccd3e7257c167f0fea399facurlwgetcurl -o cellranger-6.0.2.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-6.0.2.tar.gz?Expires=1762328807&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=axYT9Gj0l~9SQRWDnYdE9E6FKDOq-yfNtriNXNIpGTZpg7QvRTqORQKokzhkJkbJC7kSmEfnRmchUTAnZ0lrbXWA8JACzD~cJhCwMtDgthklVL06hD3BYZxf1viMhYGiMLsQGl9ZD2stEyO-RK8NGIJTNLvYLAGMnlB3OOIIW4~WJybD0OdcshjXIj55ztnEZGyy3YS90hzpyQIHTDi4Nt7qFlLhNBVrnFS5gba7UBuEUJiD292elAB7TqFG7VzLzyZ5OKl0ntO7fbabKUy~TGKNj2v9HM4I7C-sEMYGuiwGEta00en3YpmXl2Y-r94txmHTb1yX2vqHJdaz7OV5qQ__"
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Cell Ranger 5.0.1 (Dec 16, 2020)
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Download for Linux 64-bit (tar.gz)File size: 955 MBmd5sum: 8b9d217c160d52902ebcde8608765119curlwgetcurl -o cellranger-5.0.1.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-5.0.1.tar.gz?Expires=1762328807&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=GjLqaZoh498H2zEKgcOyCh3rZRDjnOq9Nrqnvn9snokBkUxCIvmQtQxpoj7vB14S4Z4Z~dA2VDX7XZLN8D22ER-Ez6x2HKmoAYCk1TS56Mf-gRKuI3zy5tAlhQ53XwJrbhYPwveMvs333MKT7N0ri6w-ekEuRPWMj6jYAgvLlRHBKF0yinebOW~Rdf8o30UCU1gBU3vdcKNViMn5ANS4WOn2sL6wUW-mwxGJwnS~CMfogi6Eny7Xjg1MLEgf2m5OWPm4V2B-fPB~H3m4KGZVc3s~vmp1Xp-Nc1~IQ0NYh602mknrySsSExcHMKgprpuiJAmZgYlTMvCZ~1-ZVnh8mw__"
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Cell Ranger 4.0.0 (Jul 7, 2020)
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Download for Linux 64-bit (tar.gz)File size: 972 MBmd5sum: cc4ed44a57570f6ecb3ea5881e01511dcurlwgetcurl -o cellranger-4.0.0.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-4.0.0.tar.gz?Expires=1762328807&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=R27SD8BI9xQD96NS34peCcraUn8W6GgXX~J9yZ~iPz-sbFBb7CRlqLXBLt1NnRM4Sp-avD~4ENt67YwnYR3K88WFCHXafKCsQNOtl6G6Kc7RmEA41WZcFxMSiwDSzvCK-M2x88EGfxYsM1yzthxxkm1kmgq0XhQEJtRb-nJASh~oU30SkfIOeMsPsCYJ1oEg8nx--Xl2wt2vzQNYmb0kMmPfLSidpIHup7eo6NaeQzoTyuYwjm22zpc-ZZRNOF-mgyAws80nf4xwnc~FRCuNliOz1JJuX3ortXyjFXPYj1~pPZFEseswFPtpOzKQFOVdZStNdaoPzTggnQAayXvdsw__"
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Cell Ranger 3.1.0 (Jul 24, 2019)
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Download for Linux 64-bit (tar.gz)File size: 1.1 GBmd5sum: a362d62530e9d6a653e5bad5b9c19abacurlwgetcurl -o cellranger-3.1.0.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-3.1.0.tar.gz?Expires=1762328807&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=QSQga56lfWC8L9tsatNxedVdm4ZqLQOZGqIG4TPsaKZxYmxTNHpCQtsJv2LWkmSd664xO~9ShR6gtA4mt4W~szaf4tPB5NTcFSX-ZaGtVmSw-bc2tvematuOi~qg-3xjvGRahcG4WS1yKiuKsFLk1WZ3ptJ1nqxAo08x1oQgwM6koUjheaR1zeOBJxvUz~saieO766vu5wkoKOaf7cdsxnR0Al7uv7DjJ4v~kUtP93suf3brWt2frHEPtxVl6fhvWGfCN2n4-91HunRYDvvE8B2NmxXNzqV8OkhIT7mCEwi0nFpBP0h9QNQwlmbpiHFkh2Ioe67Mg0jzgDb~fgDJKA__"
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Cell Ranger 3.0.2 (Jan 15, 2019)
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Download for Linux 64-bit (tar.gz)File size: 955 MBmd5sum: 73f3766579e800015f82daedb388fcd3curlwgetcurl -o cellranger-3.0.2.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-3.0.2.tar.gz?Expires=1762328807&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=ECajuUERIkZ7DcELAAGmJ~bfAWG6nFq2WkIBMW~7AYEWo38KaxiRSKk1Ub41qoSVbeama5HN0bH1ReM-SylfOxtTFRdgUb48~IFN64Nm8tlVETF6Xn3rqijTpxFu0oAQEOySe8~fXTWaKWYxiS0Kn9pZ1qlcnAFKhuXC6FC-L4s0FvW-ZHr6DbLVJ9u~d18WTTlA07QnSlMsyFTnpF2Ll9EW2298Ur5bUiP8VJLyf5AtjUEtvIJLokNspMMmvNWjhzjD-Y8fZM4UFdLIRVTVRoRqvI2rwhMs7pd4AUljcoN6iVVAIpxpvJcKALDqBABPtQ3RrmuxyS~xzFEh50H~9w__"
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Cell Ranger 2.2.0 (Jul 31, 2018)
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Download for Linux 64-bit (tar.gz)File size: 663 MBmd5sum: 021a7c0059c17b29be79f5f10d7017e7curlwgetcurl -o cellranger-2.2.0.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-2.2.0.tar.gz?Expires=1762328807&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=E9kXUVPA0m3fxDu-caGalVvjoM83YsA4w~fmZC8IcLzUPvrjd0pE9elEHm4HMBagiU-Wfiv62VIAPCV48ZyqrWF378VF7dV5LlKDYSriuSNGSr-NS7HhqKjDSh6Tjj802JXLTh9qANXL7mebU2OXEB5Il~YjdB01DZn6AHeeBLFFqyQNhDOcutsjg3QjRkKZeXMV~cFp1T09nh4a1tOWCFSG8Cft0oBvhzv-3BzHR6mxIbNr4OGUT6Ghha~PL4MCJQDy2ZS0pfhKuDaG-hn5oErqN6PsK-ZbTcg8DXYU-1zMZfdPqgI4CaqCxdUJo5zDTUmxtW12LQ7te~8Ray6byQ__"
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Cell Ranger 2.1.1 (Feb 26, 2018)
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Download for Linux 64-bit (tar.gz)File size: 683 MBmd5sum: 52ee46d3cef8d48b17953d6df27aeaa4curlwgetcurl -o cellranger-2.1.1.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-2.1.1.tar.gz?Expires=1762328807&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=TyH63kXr0woWxS7KV9wm5d~WURYFBvB29tK~1F4ERug8WOV6QsgDBJ2c5NHlYJvWbavh-44iBcM8xiwOs-ST~pKxFCuK0RgPfZwpS4ou7B1G82VR50LROYJq63R2-G3xa4xSHXXzFTmadBT-7m2tye9S11fOI-jOBKh6HpsqY2aTyrTz315M843j2eE8moSAL5Dj1TxBWlr87Dr5Jl05bI9IsNhpsIIYElWPrNJqsUApJlSF8AnywI9VlFH3mHZ3h3WD-mdyd~ekRBqeMVaKRUIyFAwbR5u74nOZm26fF75w0XLCnleGjNJuqV6ObJnV1ZJlVQz43ksb0EpdmDBptA__"
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Cell Ranger 2.0.2 (Sep 8, 2017)
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Download for Linux 64-bit (tar.gz)File size: 732 MBmd5sum: 4a2526e556f549fadba4a709819d5d05curlwgetcurl -o cellranger-2.0.2.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-2.0.2.tar.gz?Expires=1762328807&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=lD3jwzGss5kg4N7b75wfK1moncqpOplEmhfbpDxU5E8bNzr2nZilTKKiBOe4bTlJMWQYrBxzPIpCiiaShZGEY6PK08jqTjuUiVVqfOoVczSrFOydQ0hMkGHARaMxy2fxQjuV8Yd5JgzrlmhUlk4CxWm8jKlv5ikggF8MFHxw5IklaQoiu1ptsS0J8k3BSkU~xoIbOpZ-5UtOMYChgxgTJ2GtcbSGJc~XXSoEukFxEgSxqHW6KEEs42OAgt6OToWngnAp3SijWEd82olbMRnyKokzGy7oYnTPO0cs56rzUnHVMJuqkK-F8oY0R1lXbNEHXgGc0KhP1T9g91F82ok5~A__"
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Cell Ranger 1.3.1 (Feb 20, 2017)
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Download for Linux 64-bit (tar.gz)File size: 717 MBmd5sum: 524bb6a17ad10e242cd294678f4cf7d0curlwgetcurl -o cellranger-1.3.1.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-1.3.1.tar.gz?Expires=1762328807&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=J0kq3q-B7clublS41yDJnYlyrdAKnkCBTPH~uW27haBpYRE5jCFemFYHL0PgoCDv41VIoVVlOiraSpbAQXJgeWbDZh~f4RXCSHg7f1zmPxEnKKRouvnymnQXDHuQJKkEkEuCZHU-EWSurHTkkv5krnXFxS4MBKSSbKefd1F5bC0vtF43ZhlOSMsDFyf03R6Tl4ZuePc-dOCjvvNa8-YaubTdns3QzwDRk8rylWI~VfM~Bpw~OEip3oUDfcn3Twm1hh~hY0K1121I1p3HS5wMsZBabbNtvTCxK6INzkndNxYJeXh66~OAhCKl~-xSeaLUhz7u6zakFkeq9OEf8ZfjOA__"
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Cell Ranger 1.2.1 (Dec 16, 2016)
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Download for Linux 64-bit (tar.gz)File size: 712 MBmd5sum: 889dc2908aff03e2a0430786e5c09f45curlwgetcurl -o cellranger-1.2.1.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-1.2.1.tar.gz?Expires=1762328807&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=I2wZKgyRBIpQ3bnAAF5I52khxVOXKpHLtGdtdQ7SEB8-hMPUYzquNWXk1aUxESVJAywdptv90O8r9JonvD~Ru0l51SHaDhbPabgWpg199fkchbnvKVIUdNlTjL84UCq7zMiVgNvyq0EBl1y54BshqB~2WMBHSNwxK66umLrZHdZXEFZkDXZqdBAUBqmaQzUuW5c~lOVIfGf5oJs-BOyhQuP00Sc3CRueuARXeDt0vx~cTnK2~ES0i~ePqEiVlMG6kCfE4F12WrVBNSm0WV9nJ06lU-tDid530~GRCdplQStLfNV3jLKmxmKRgZgaa3IWpFLsM3FVnhyyhantNVb2aw__"
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Cell Ranger 1.1.0 (May 26, 2016)
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Download for Linux 64-bit (tar.gz)File size: 395 MBmd5sum: 9bdf639cd135bb991267683f21469b4ccurlwgetcurl -o cellranger-1.1.0.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-1.1.0.tar.gz?Expires=1762328807&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=MeLoyvIqNAY~15CLzGPA1XaoeDGSWHyitLy6BPm4vOZm9IYgVIgdojzLC0xmoB~ddG0WpCXIRjslSzzOKy5440wll9YDaKgOxJFiOQoe-uF-5CUxr1PIkknnEp4ZwmSFVZKSWh9xaXV~eZhwI1J5rLFDjoy7L8z3v0BALYiaJb7Io49-Qnm8cu2nhLWr8cU~z1CqbCK4m1sLn9lldiDCwLn-gcSRurUJSjo4zm7oL38i2Il8b6UECHIEHBIkDWATeuqppB9Kg5xIPNrjAW1cUR6JsqCAsJtME5N-~ClW7~AGhezK0T7MhaVvOw2AbQihHtM~ogoANaN2mLD~mpTmJw__"
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Cell Ranger 1.0.1 (Apr 25, 2016)
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