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Previous Versions

Previous Versions

Space Ranger 3.1.1 (Sep 9, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 827 MB
    md5sum: c0b9a274d7d3692e28f086818eb55e62
    curl -o spaceranger-3.1.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.1.1.tar.gz?Expires=1743840421&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=ZLUrThpoQi3QCDP-RPCmAgyY2ghVjANPdNqSn2DT4RouVHfCED2dLG7dLO4599e8a2aMKRweoTZvvnjuIrPSxLWeh1uzXHPq7uSLqjJQD8rBv~bg-NYV9jYd4cgNT-I5PoAn3ofG85wm8M8ZbwQWy6r6HTtP-6FTrF2Jlzxt488~566xVLS5wDcTYwKRDe1MjyOlpSETxA9HaGt9yAYM7j-i89XNsnPoeErty-Yj0gEaNQYpgyJFvXY2z8EXBU-Jq4jojVMknomJzI5vi6lz5DximDMS5fLYMAqnLU72atMPcI5faFWty~txz-sKCJE1bV0QNpYDZuaLxhLIKnucig__"
  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 527 MB
    md5sum: 4adde78374877cee92d056b903a77759
    curl -o spaceranger-3.1.1.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.1.1.tar.xz?Expires=1743840421&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=NviLWlywTvNoE-Pnga3I6bawOOueiIE-gN3CnccnOCEzWwgNjN-naE9ikyfNGoQaEarNp4NYjk3yYJl4Qo9QRMsGmDeMb3QQ09QyDfRmh32Eo0pCxgAlcyFblXqgvib7pmpljawCfd7DiNmLaZMVN3x75krDMmxzq1ROa1FVKkRgiXOuALDY3YFj7yrtr31FbAg0YJLoc~u9uXG0b7YUMJ655NvjGfqGLDohgpx4ycc5BD5hDtdysga-n7HhuyW8TmBGROn0DyyGZkiO5U7kDM-QZTC2sNzdbhk~1BwkIRfHzJdvQ26ei7kRw3qOebsQHZQg~tz5-bZPhAUy7j4zPA__"

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Space Ranger v3.1.1 highlights

  • In Space Ranger v3.1.1, the pipeline has been overhauled to significantly improve the CytAssist to microscope image registration process.
Release notes

Space Ranger 3.1.0 (Aug 28, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 827 MB
    md5sum: 13a2c82adfb1f1efb737e2be121000d1
    curl -o spaceranger-3.1.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.1.0.tar.gz?Expires=1743840421&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=DgqwG7a4QUt6w8WbvuVce1ZJd~iqFSzGdHod2EoAJtTFW~XwbFCWTIaWkwM1l3WAvWXVDti09H6qzoq0-cRPn7oXDmFF3CBoykGRtpsDqGZnvTISQh49QJOopGbSQQh18f8~c-VYrHHDq3gUQzQyArhieZps8qlPjYtsalbDkWrStSD~z~oHiHPwmgPS0UYgemtpZ5UVM0-gnYzoxZaTCAO4ANEDUy7ipa~hWf-m4iVz9qML9bgVozv2NR2SDg9WgIOH21JNOzkRI95WH9R4rTrnZe8tU3Wxdp3colPPoe6xo9iSs0Q99~Zm-NYPpJSuR3ccVkMJurhDykw8qAqWuQ__"
  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 527 MB
    md5sum: 28010d3724e9effc488470a961fe39fd
    curl -o spaceranger-3.1.0.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.1.0.tar.xz?Expires=1743840421&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=M9jKmjd29xKSeYkEUH-4Thmp-W9UdMN-lZoIss9hNwv~a6TQowep4MKi7BQUTDwLRRmyvOdIhkaVBil1gx4AtENnrAH4FLhdkoRDS0eyqXh5-BUJmXxf3TiFs~2xqRdycajlAHJLt3EonsurDZuOoqRBdfCUfITPN34zmq1HSaEVvuEvhuf5nkxgzFQJv2QnyoXxD6qGT3KoqRoAaZHteyjzkl1tooGCz-ERKXEOsEs3i0~OyNroptPfUxsUhRVGwPWa9u4w-ppThi3Nf-L0v2jWK~0uVK90y42LrdFZ6PF5qKddR-CLOyClw8rCZogJdRB~9R8RHy2XHblxJLOHKw__"

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Space Ranger 3.1.0 highlights

  • In Space Ranger v3.1.0, the pipeline has been overhauled to significantly improve the CytAssist to microscope image registration process.

Space Ranger 3.0.1 (May 31, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 757 MB
    md5sum: ae65e7ffdddbb966277b7d1776f8c63c
    curl -o spaceranger-3.0.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.0.1.tar.gz?Expires=1743840421&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=DbJiPfeQ6skRWuuB2z441xyc3InqjayrVHG6wch5NFVud833sDfKQaPN~gACYtbp3EYN4PziKtmfcZse85G6ezvqa2XOTbN7Hr6VuClLXHwd~VD-0Y4urmz5HYSQsGVYwRSv2tH3vwRY3SM9KTGQh~zlXq9C8lGWy7eWp5lCILFh5KwzP64Cp48ghWlWeHOwPHc6f7RxqTL6myqIo-Bu8YRSnN3jlUtray8bHj2KU7JxP-q5V7l5NYcFbDB1U9bZZbzujtuKmXULMqjLPD5aoZ96NzvkOgHswEWB-gvtu4ud2xGbm9YsP9~wcQ6byAJ7TX460W59zsKUfe9GLaCjZA__"
  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 481 MB
    md5sum: 451495ee2074ff9adbac49ff8851ea1b
    curl -o spaceranger-3.0.1.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.0.1.tar.xz?Expires=1743840421&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=ijmTGU~NxhTtjZehB7rrVAPRS1Dh0HYIKsmBAUezchvE5fnEqOnCYrc6FwTVGlzx~Z432r6o05S1wF~Sev4gBxmvDsT~1qNlz83wml7aX68p9KtquCmpFHIlNxj9lXA4FLOd1qsDTWU6VxSdsCvYHGj6ioDrjdRFieE4i6kTzZtLAOEj92uF6-vZ7PzNAxPAJJy1JNwKcSzrL4JyAjvyfdlkpC~4AZGgp9zNhhnGUwQfaK19zcEdY6rCLIZn-1fkUfu6fzwyNbaA4JeHj5H-Z1bokPKV55PnM7SzcpfJlSV1IF-CxriZ3vcZkn3vME323WyputNxKvHiTPcBNVmiow__"

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Space Ranger 3.0.1 highlights

  • Space Ranger v3.0 now supports Visium HD!
  • Space Ranger v3.0.1 includes bug fixes and other improvements.

Space Ranger 3.0.0 (Mar 25, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 795 MB
    md5sum: 19f4443f10cf94aff5768bd8968cb214
    curl -o spaceranger-3.0.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.0.0.tar.gz?Expires=1743840421&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=gTunX~~sRZ57a1ELzfp0A-oHwtZV5uUAwxrS55Hg-jMvRwltuZJ8t9rfVjYpj5~w8YSFnz62cUmg01SUB0hivY2KJyfpbzC3qgAEk6pJOd14xp4haa~SC23OEzdIIdyNyafI3uvoJcXNbW8aZZNki8MC2085FZ634nz2juL9-oNreNws-YVziaQ4zwWzAcXxc59xsQw4A3KZF0ZO8BqfxTTcHIDFozg5GLyJXfSsDM-Wrlfm2bE5ZBlD3hToeJxETQv4rl1iOXko8BOE6McEvafWFpM9VaObAHTXmVe7i6fS8JYDk~Y-k-wsJ6HL3o74dZID19Nf0HeVtQjZPyWaIA__"
  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 507 MB
    md5sum: cd02b83fe849672066c40a1734819432
    curl -o spaceranger-3.0.0.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.0.0.tar.xz?Expires=1743840421&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=B6wdIIKCN1kESfQuxkdXrhJ6Y1ygn-DD5deBdXyWmBHtbBLprGmeDthfw4ObodZHI9zs5uPxyWNpIYV-wAHFnNrwPyDBWmf8U8PDbP6jky19E3P-JAUS5He1j3pzYM8Xwtw8hKxfXCPnWbl7ptEn-gKwABcXR1Ccv0jprj7G8XZJBbhmuACcw041eovjvvLeDR9p5lhMjoDVfsoGX9HlKXlNii6RWpmFBwmBuzAgEnuOUtb4tK10ULt6yWuZCdied1CS6uTxA0HH-s5GBfMzELj6HNsxS2dKoPXfF~b7YjW~ceFIFAQCi7wLL2elUk3xIA4JzqLM9R8lBKvBeybW0g__"

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Space Ranger 3.0.0 highlights

  • Space Ranger now supports Visium HD!

Space Ranger 2.1.1 (Oct 2, 2023)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 707 MB
    md5sum: 0ef64524af2735bd2a0fc9eef5a605f6
    curl -o spaceranger-2.1.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.1.1.tar.gz?Expires=1743840421&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=kMwC6uXxqcanz-5tJZYJ6yjR1PBTiGvW0BRdGf2LYlCDc0NP5SrmLWySRNSzcb5VzQdFOxftQD7tEAYgTRbM4gQkZegFHm8GPCT1ZyPa9if1QAserhfbV-tUl1mPdG8L3KK5OAS1zkv0hFw47c3GGdWbfSRgDcMBnGvDS2DdA-UmrTiorVEU68pDurMfJE3bZrJsbKboq1~Wumo33ScySm0P7I~cBN~Y9DEmns-TLzU0aRil6db1K7JK9~56Dhe~C0lTsVSnlf1ZD0Uuhtb8gONUk5CsDu5tnayLcKD1dale9ViVEcM0n3dI7TowGxLSDgR6YVCLimbP~dk5cab6rA__"
  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 465 MB
    md5sum: e1204bb11b3589bc5d5af244b51bfc18
    curl -o spaceranger-2.1.1.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.1.1.tar.xz?Expires=1743840421&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=bATioxiMYg0VuWjpPfk0Aim9ya-FbJBy2ObMSxA9Gv3G9FzUBCZo-S5f0TcmrOZcvF6N9nUnbk~6OffJcEuxF~1Vu9TaQii3xNN8~FpLpT5ETCJs8hgEa7yp9esekRrgz~6rzxtHHunxSuO3OtHguY9-EFsyX4WMmfEU3zFd8GncyVIU~OSbnPSjFPhtox29LpDtrIb4Vlagq6a16zui-vQnfPtR7C3z-OEowXvVhcYVX79cA6SD-TDDco-LtkC1io2Hjkscw-Wnuekar-lLroEGEpVVme7paJgytiAwjv1hRMo7GQ5fGV972N93qAif~hvVQ61L~RFHlKP9W1~vsA__"

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Space Ranger 2.1.1 highlights

  • Fixed a bug where 8-bit grayscale images were inadvertently turned into 8-bit RGB color images for tissue registration.

Space Ranger 2.1.0 (May 16, 2023)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 707 MB
    md5sum: ee94c453c44770b2b69d6be46b948e3e
    curl -o spaceranger-2.1.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.1.0.tar.gz?Expires=1743840421&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=JAHVP31yf-lEAuuSQADHzYZMFvtdrD4yzP4lU-9kQdMMCR392ndElG54ngbZf5apabAE0ndrw67kAw2XjL3KrPtfUpwNMd8~~peG5EaMWd-~o32KZCa15ipk43C1exFzYHRpjPiaDHQ97JiKxTnHt7K4WRlBdv46DwX7b1VJGzxoVW0lA7oVWLlqClSfSwPim3NPvavwnV2xFuu4SrfRqGZVZHbZZAszejip8zMridtMES0vcdxYXWo6KL6N~AFGBuC-D90E7I27GwoDZblItjuZWEsTg7mDJF6MN-zhcv5TIsCLHwhcAVGjNBOlPbNtgVkTtGpFFaGshG2ao7c4rg__"
  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 465 MB
    md5sum: a0d90129a81c41cbdd728e23a4d25161
    curl -o spaceranger-2.1.0.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.1.0.tar.xz?Expires=1743840421&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Au0IZ7PQuyZ~l7I7J1etG1a5JkEB3xsHYFxhnHr0SeshKXXdZiQyWFZwX-PwzX9FQpEy9wrID644XD~Tzg5eWNjR8J3CzU8BZ~qxIL3ZkC8D8jjPn37O6kWDkA~0Wm7UtzT5SFRpml7FhCsf~fHuxJiAhBPh~tybn6pIxnt2kwbB4gejcSqgNF8Gpg8VvlNvkGBe7QsCdKvwKLMjxM4xmz50QlTENmktTQlVaSu9P14y-8poM6V~~vVUKreeSeRyDIFGa6HMoWd-3e8N1S-hu5lwO2BzPP4ptNI9CtE1BnzvN5YXI2UhvH42IIxh6UskL50a9rJNMfpfzgA1dP~yXw__"

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Space Ranger 2.1.0 highlights

  • New feature: Gene + Protein Expression on Visium CytAssist.
  • New feature: Reference-free spot deconvolution.
  • Added support for bigtiff (btf, tf2, and tf8) image file extensions.

Space Ranger 2.0.1 (Dec 7, 2022)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 664 MB
    md5sum: 26151804338ae4d4b44151232bd64b50
    curl -o spaceranger-2.0.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.0.1.tar.gz?Expires=1743840421&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=mrEejE~cXCdKSkn9pMrD7XplUpQVWf124x8xPJD5rdEqfyaxJ9Fw13v1PNggLyXuYqhvMBjMazXIdM9DviDiEA-00HimyPE-f0sZ1U6~qjfLUyzV8YjpyqVSfPaSBOPqDG2OGSgVnhUv4ElbvI~WYMruGSBqMxzyJoHbMKlJG9sVdcGv6r3ycAZ~ntlpY9SustAiPul0vJM87sNZcHuzN~xo6~7~j8-R-8UAkJfepFDDdY1aZCOwI2VHMG0h~FT2DXCa34-gHpyQCswEaN1jhmjeeh4mfqhl5L6ryJA6IuYLth8uO40YPjdL6TR0img~~ZAXDpksTeMweicOYta6Bw__"

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Space Ranger 2.0.1 highlights

  • Reclustering workflow now supports generating a UMAP projection in addition to the t-SNE projection.
  • Visium Image Manual Aligner now includes additional support for images with difficult to detect fiducials.
  • A new Spatial Enrichment table which allows users to sort and filter features by their Moran’s I value for Visium Spatial Gene Expression is added.

Space Ranger 2.0.0 (Jul 18, 2022)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 662 MB
    md5sum: aec9ec128c7bc9fbf9fd6d31aa390d4c
    curl -o spaceranger-2.0.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.0.0.tar.gz?Expires=1743840421&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=M03ZlUDP64i~B1iY5ESLG-D-~So8idRibmH892TqXv368G-tpvdTjaBGOn05MWYk-2LoJt4P0AIrimipz8e4fHLb95EEaRqtSWDA4-LrAl5DDRdo-vN3QjxiE33DuhQE80mDcST0h136T8R7o6QXgMBSdcypDHaxbb7zL96HjpHOnC2ERfU~VEPm2k-I~zOs2cf6cqMiB6VkGSrisxRAIo4K-ALugNgRsMZaT-MyOqpNKZKzR4jNGxFxg-hASw1pSOR4-G-dIOqlt2kauCZTgti5XERuPoBQ~laiRcLmJEpOu6~5~0ntNusOErK9RlJ0dsKR0zSNXlFkPrVDJk~Iqw__"

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Space Ranger 2.0.0 highlights

  • Space Ranger now supports CytAssist-enabled Gene Expression analysis and includes image registration between the CytAssist image and the microscope image of the same tissue section.
  • spaceranger count now quantifies fluorescence intensity in the image at every barcoded-spot location.

Space Ranger 1.3.1 (Nov 1, 2021)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 1.2 GB
    md5sum: c2eb73125d9ee731fa825ea3734be1b4
    curl -o spaceranger-1.3.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.3.1.tar.gz?Expires=1743840421&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Vkgr03lOlO3DDCDMT74N6sxjZ27ys49OYRFrqqd82JvJVaE2-J~tXSOuxP7qUmhI1Nerlct3ViRlVK3AYmM3OHDbVeredM-NFVfNHPoUhWl09ei-v~rjpUYKF1RB-g52MQ8-dFKQo9P1IbWLdGftZdm1ZY5Q4KNEOfYZ5MhcASdkK2-eJPyD0vKh~KxYeOKm7iZZh1gvSYmmBRb1gGqr50AsSueUbhWmcysg8E7FMeN~2InkHIPCq~DPE8q4VM3Cn9gNbgmPBTrQf~9OpNZnTIHXm42ZjMJCu~lSbSTQKbIBIH-Aecg40Brjqi7Yh4L7woq2tcqvJOFJvBPjnNK9wA__"

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Space Ranger 1.3.1 highlights

  • Adds an alert if image alignment would have produced a different result if the --reorient-images option was specified.
  • Update warning for low fraction of reads confidently mapped to the probe set to be more informative.
  • Unsets additional sysconfig environment variables prior to pipeline execution, which may otherwise interfere with the pipeline conda environment.
  • Fixes an issue with mkfastq when bcl2fastq requires LD_LIBRARY_PATH.

Space Ranger 1.3.0 (Jun 9, 2021)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 1.2 GB
    md5sum: ede7f98db5adf7785e35ae0508c48f74
    curl -o spaceranger-1.3.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.3.0.tar.gz?Expires=1743840421&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=boRo1-HE~XKr7tpF7Dz3-eBKGuJaynsEdjtNODofX73P0oWLD7tIYm3GHx-92w3LHaoMRmAjCKtyHO-3AJ57qxpfG44vHCmkJ-qcGvFdhHPLQbVviwWU~pjmYvWs-X5oPh9uGaKkIRTpIxkLeqKzjAuPUByZ~0SIe8dw-iwMInbSwPH9tQGu2jYSHTT59fldSaxZE1X7B~4IEQcfhw2JKJuu0KHq4Qnh5wHqedF5MD~sCzkynwgtuwpBo5llcpihKmI7Spml7CHySQjTNSryVNH6q6aT3RWbKTc4F~FOQBJ~DzentVEWlkbC3Yt0Wf2uKN6r3ZYxIKtB9yFCr2X5Jw__"

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Space Ranger 1.3.0 highlights

  • The recommended operating systems for Space Ranger 1.3.0 are CentOS 7 or Ubuntu 14 Linux variants or newer. CentOS 6 and Ubuntu 12 are still supported but have been deprecated.
  • Gene Expression analysis from formalin fixed paraffin embedded (FFPE) samples is now available in Space Ranger and is invoked by specifying the --probe-set option when running the spaceranger count command. Space Ranger 1.3.0 or later is required to analyze FFPE data.
  • Space Ranger now calculates the Moran's I spatial autocorrelation metric on a per-gene basis.

Space Ranger 1.2.2 (Feb 3, 2021)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 1.2 GB
    md5sum: 3280a085714ce7c894dc14b76312bcda
    curl -o spaceranger-1.2.2.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.2.2.tar.gz?Expires=1743840421&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=XAjURV~UjEDc3NYG1gi3rxaYZh0b5Km701W1MRk0Vr2lbYCEveg6e9pxb~DDhNGi4GV6cYsQVFG8WZ61Uw5bDs1MmOiBEvxEq24Hw7rt0sXdV3Fz3hJJbU827UvZF3b1KEh3HMvmMYMMCgKJXpeQsWYZDaUKkPX-38W-HSlG1o56WPsZSOkcHKKtcL8UaTHU1s6dv2l7I741oL3QTS3XHBN5IJRAm9DZ7QZO-GHMw1lzvhNVx3PKHK247n32OdgLrT7JFovpbho~nLndJDws6QAgLoDM94FuViV7qWn57U1aBYLxhaLCoAYSZgt1ZLMKhYjDzLi67~lzds9N6msnfA__"

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Space Ranger 1.2.2 highlights

  • Adds support for pyramid TIFFs, or TIFFs with multiple pages of the same image at different resolutions.
  • Fixes an issue where targeted samples run against new references would fail preflight.

Space Ranger 1.2.1 (Dec 10, 2020)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 1.2 GB
    md5sum: c24ecfc95c5e4f1c268354c5934da98e
    curl -o spaceranger-1.2.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.2.1.tar.gz?Expires=1743840421&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=hYvL6H5MsaZ9mYPC6vJxvq-Rk7KHYkgaxBRBCdDgVxxUzMgXjAj6rh6YEFXU-d34jZUOnuIX7pytSTm-gvMTY0k-737fIBwCk5HYjvOtk50WPQXMbuoqAExM-JLr63h5Raz8hx~e6QkH0eSYQBWrkH~m29ufQBHLQd4gULAqBsIhIAt05hsSs5cvWUAqm0XVk2GdAfMK8TpNDN3syyOLxg05rwFMpWbUl8ChRpJ4BLSM6vdLW5ND1-qCuerq4gBxX0nQhnpaVgae73OTv~x5vh0bMeCxeRAiOVLzOm9G3WZdDtEzZQ0XfTo36FyUXiTYAEglrt~2SFSgciCWfbo2Sw__"

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Space Ranger 1.2.1 highlights

  • Fixed an issue in aggr where files would fail to be copied on NFSv4 File Systems.
  • Disables multithreading in mkref to address an issue where mkref would fail on hardware without AVX support.
  • Better error handling if the pipeline fails due to a missing .env.json file due to an incomplete copy of the application folder.

Space Ranger 1.2.0 (Oct 27, 2020)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 1.2 GB
    md5sum: fc21902700779111afc3c813bbb0ff5e
    curl -o spaceranger-1.2.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.2.0.tar.gz?Expires=1743840421&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=RHHsUNs~JPQxeSBTTxPUgi5J8qfPkDb4KFUhkyhdc2lKKB86aqXQNEFwsVd2A6Lv0FHNHzznOM2dhlDgO2OY3AeajHW8QCSo9C5XxNIHUSPntz~-n584TNdLlSJ7QRH7vIXpFf5QOwnYGG35AKvHa2MEnp3oDpVYpTtOVPZYmFHkyOVNhMt9MS9OSZYIqXHxr0Z2W74qmbFKpf~XqiKrRq3T6Ak11WN7IzMhsze4hqqabIPa2zcrKCcBKbJ3TL9HNEWofBcLKtWGgzz5cm0Hm3E7z7DQMY48wtMDixApna1r3D7gv~-~wGlgiD~AMb9srGvEQfFNFeXojFhZAI40qg__"

Download is unavailable on mobile devices.

Space Ranger 1.2.0 highlights

  • Targeted Gene Expression analysis is available in Space Ranger 1.2.
  • Introduces the new spaceranger targeted-compare pipeline for direct comparative analysis of matched parent Whole Transcriptome Amplification (WTA) and Targeted Gene Expression datasets.
  • Includes the spaceranger targeted-depth subcommand to estimate sequencing depths appropriate for Spatial Targeted Gene Expression experiments.
  • A new command line option, --no-bam, instructs the pipeline not to construct BAM files.

Space Ranger 1.1.0 (Jun 23, 2020)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 1.2 GB
    md5sum: 708b93997295db31bc457b3d9af79ca2
    curl -o spaceranger-1.1.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.1.0.tar.gz?Expires=1743840421&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=YgTtRof0c4bw3rRR3~B1DFMP0bKXpKcogG6DmMNUMR80992QsRuKsQOcma47-M~8bgoLaeQ4b~E7wA9bd7VLwN7kuFcY3XIgx6ANqQSvkIpP6hsil3UNawXGUIzUdtDZG~My2qpRlianazMBWOdMpOv1XE4Xr49hAK-OFy5nrT1z28YVT-hTNXobv-MzIhj16nG7kadChcdbheC~mKrGCKBmpu29WVG9-o1ag~t~cTakcib9d2K69gomhNzw0ACH--DLfUDwjdBhdrKNBuquBLBnw3MuC0WDN6f~G16bDPGSdzFzeXLy5USsJ7IuApFiSkGuDW-53kvY9YXgc6nJZA__"

Download is unavailable on mobile devices.

Space Ranger 1.1.0 highlights

  • Support for fluorescence imaging input such as IHC/IF.
  • Aggregation of multiple datasets.
  • Optional automatic rotation of slide images.

Space Ranger 1.0.0 (Dec 2, 2019)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 1.3 GB
    md5sum: 5cc7fb86d0cbff7df687b11575efb7cb
    curl -o spaceranger-1.0.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.0.0.tar.gz?Expires=1743840421&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Iq-Od~V6ldwkdy5dEvkZ~AZ1kJu5Sq2bJNr~haUkd8QbFzP3pfID6fOFlSckq2pJWJw8WMDwY~eXfNZu-ae1-C3Qn4LLTOUDj9feipWjbR6znUZQlj6mfnYp0aW9gYL6U7m7Gc2XjPuJ9zCmLYBYO9MNcHC9FkApJnKDH1YscBwO-Hi1Y6OqlfiD~uVfapn7CwOx7xXwbY5Hd8HBIKh76cTpudT5aIm-v2mbcA5Xxwn4wTWZrTr8Vur3AhOpKribOTDMKksPKQicwVYP0~jtmRE~CK0PlppzYDUR5P7Zlp51LRKIIczZvMFm4jGYHvvPmlEj9ot~Q2cYnRqImAXkxA__"

Download is unavailable on mobile devices.

Space Ranger 1.0.0 highlights

  • Initial release of Space Ranger.