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Previous Versions

Previous Versions

Space Ranger 3.1.1 (Sep 9, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 827 MB
    md5sum: c0b9a274d7d3692e28f086818eb55e62
    curl -o spaceranger-3.1.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.1.1.tar.gz?Expires=1745719842&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=kdZUtonnXO6olf9JtteAE1phOgfwlq10b8q9h91174oSKkuPhxN7NB3DWPMj1jqkvojXyW45ShSE8Ma93cr1YwK2Uja6VMfWW0offUBleJHxR9LWgyeeu9Haf8ORhMsr7~ml6Bfwtnotl~SkGeQQCkGQaIFxM-ts5KJqg~zgAAbqnrM8cHFFmDSPP~h3tzuPLPmurWlzlRX3uusuuPpLKsAVAa9FhHWsOvFpU5x~tYLsyE74Qqnv1muRVH1f0w9s6f8oWMQOEJ039nW-Ni8hT8~GavIO3ydRI26V9j-ANxuvJn7fYZPrEZ35uxOHeTljcwVfVRgQi7Ig-Na37FxU8g__"
  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 527 MB
    md5sum: 4adde78374877cee92d056b903a77759
    curl -o spaceranger-3.1.1.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.1.1.tar.xz?Expires=1745719842&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=DlsDI8O3XH~rFbFS~uxYiU8q98vTkcLJACUu-S1XHG4inNWrNHVK0U5FSqymHxNuhRF6qZzyBriTezVbWdA3ar7I6sd~nOTlzpYWg7qSMbcKWrzL-giU-BW~yz7T8BmEHyk-4kF9TB9DOvpHKbjQXwKmEtWZpPS3zklVA~knb2Ut9pxZIMj1DJncbxId1JdLE-p6PqqqAvwyArh8BwsPKOsZYQOz1Qnz~Wf5YkaE2yjEN2q6ie0YIn3T327myEfUh2U9FTnHW3~AxfuzkQr~1Mlr6xBYlyUlLgeAq-hEIJl~f~2W-d7gi2qdOLI6e4R33O24pM2BuRuZq5Q3FpOO8w__"

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Space Ranger v3.1.1 highlights

  • In Space Ranger v3.1.1, the pipeline has been overhauled to significantly improve the CytAssist to microscope image registration process.
Release notes

Space Ranger 3.1.0 (Aug 28, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 827 MB
    md5sum: 13a2c82adfb1f1efb737e2be121000d1
    curl -o spaceranger-3.1.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.1.0.tar.gz?Expires=1745719842&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=kfYP2s476V9gINg5EAHji89JWAKUb2eBy39NBGc4BTaRAMipUIzKwJq9XyyJW6le-lMGslZUGFLjwShopyQLNeOLYxsoVSYnGnbjkLsfsh4AhCS0M42zkvRZOgE~TyG88WBKPkq~GSl0-EyMUs46o3PYCwe5ocoldY~cBrR8V~meOXKUoDoNUjyCc7MbcG785VRuH5bv7PKVncx5e8p4gAoKsR-~z9LLiPnnYJORd0o0DzGhznlSsGkwNCED9HF4-dgWDBeiAJDqlow9nqxsDc-QM-5Lzjx9XZb8tW-5jWioU7nhc68~mAG5YZXspOQ-OHzPP9~ZBWz988gDysn3Vg__"
  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 527 MB
    md5sum: 28010d3724e9effc488470a961fe39fd
    curl -o spaceranger-3.1.0.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.1.0.tar.xz?Expires=1745719842&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=VYOKaJtTBGv9MdihgjOJ9FVYmTlDf1pSXblg8ImM7EwMNrLBVHsZ3OgemEg7-~oTaG~nqEZNkzJ3VFILugef1lO~HkLjZRznIxeDB3DH46XPJtESZnyHpejFkMlQcIMETkAVTmJufRYG7XCJorTipFPzNyBcp6oRdodIn~XpgChZy97fmv9QGi2RxxwXW86rfR2p6itM3DBlYvRuUrkUA6gM9uzDpGU9z3GhdsR0Obz2SQROFDhT4ht9SZFp6dAM7vzFfjw8DQOVonQ9E9E-DrWlGjveNLZuKgjP0N58~1QY1vegdV719PBZozoiavwjn61j7dhzwv44k6Ozk6RhCA__"

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Space Ranger 3.1.0 highlights

  • In Space Ranger v3.1.0, the pipeline has been overhauled to significantly improve the CytAssist to microscope image registration process.

Space Ranger 3.0.1 (May 31, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 757 MB
    md5sum: ae65e7ffdddbb966277b7d1776f8c63c
    curl -o spaceranger-3.0.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.0.1.tar.gz?Expires=1745719842&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=bMRgf2EN0fVvX3neHb4z8IbD8DjUa~iCIXP3Yd8ghoY-Enb0c-dqvJurknnBut6DwzJQggfTHKGefw4O9iZZZLBJJF6b9iU1TqXvH4tWd2Xh43Ws5TdYqXefyVD0T8gG0Zrnbj4vWDo9PZ2F1WTyuW8MANINmiNJ9pYlKbSnBkOOFHcYCwHAJp1YsnZ8GrMZl7bfgImSKeeHHv8RBMH7lTTpOWwDSXt3yV32sgzcDPErFeEbcdS~MeeM1UelRAiKeks7gT2~ro06ZfhPBH~KHeWSbblLN-oWvjTBE7kmJjDgOrdbNVDhbwqYN6fcB4MBln8fihIFcDsczqu7xDeG1Q__"
  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 481 MB
    md5sum: 451495ee2074ff9adbac49ff8851ea1b
    curl -o spaceranger-3.0.1.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.0.1.tar.xz?Expires=1745719842&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=gCh5iD~PxL2qq72N3V0vi6eVOKqGEn9s-J6BkragAxJ~X56ad4tN78A2PpeuTZclT-d20smTHScKsw-xxUyXzn2eEynOtc5Ek4N3bV0a8NJBuWg1snDTB69C8-39cB6lVYoTjAxNpaPSz65A32jii2xopBq2n3B78A3zjy6jWOm4TTf1-Rhs0LQSWtOgWDLfqWFiUkWWFMM48ijq7MdpL0WJ3LshMbmbJUC~rrOVTla1mnG-cml~8cw0xIkol~-7ENn4DelSTq-StfLukfKaohmfopPZtDgyQ84BdUV-JicHrDvSo9A8UpbThxKWfWkYdkNYrzh7Y8ROB4AIEkjy3Q__"

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Space Ranger 3.0.1 highlights

  • Space Ranger v3.0 now supports Visium HD!
  • Space Ranger v3.0.1 includes bug fixes and other improvements.

Space Ranger 3.0.0 (Mar 25, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 795 MB
    md5sum: 19f4443f10cf94aff5768bd8968cb214
    curl -o spaceranger-3.0.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.0.0.tar.gz?Expires=1745719842&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=H71JPiSWmKKKRe3kzhJ4fIFj3ZudySvEnO-4VBul~a5Fvkzu4OLVKBYGGSPwlal1WQK~KNqQN-98SiIr9dzif50vGzS96K54Eeex8Laq~Tdb~wwT2RbzxQW4SGJPBxbWDoKBU-HntkmSy4C9~cTZQSpMBEKk2bZILRgfsufxd-SyoCndQXe08mrZvidJJUWzMI0pJ0Wp1z7Gtw~xkpGwh291LXOIiHpHuXbCiiHbgmi1aI9wGnco5mItbt3Ytc8RGaf-xNSdNgelrzZhwxijI1UxeBydfZSeLu7lEg0OXeKhaEc8sSdjadWk9RnsdS4s1UqlIL9l-xltHSbqIZ7eWw__"
  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 507 MB
    md5sum: cd02b83fe849672066c40a1734819432
    curl -o spaceranger-3.0.0.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-3.0.0.tar.xz?Expires=1745719842&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=hriVaJzbNEHM6vEoXOzB64wvAW8JwjGkariAiZxkk-BjO4pkrcWs2LcEDcJTANMZz3iI1kePM0QxkeQQ9g2U7MmaSHlE~Nde3u0bCjtP6rXOLJCP4goHt8YunxU1Y-Q38kadzZZvpftzqhLacMyHT9kvr~KdtajZIUtW7j1lMn~WrX7-cg56JvCOgn~ozAVeMB8JoZkcqBDvchlmB5iyG6W2ausWTZpkuFcj3lkTRSCXEeqznZR1bjYZA0OyQQn0VMq5SJh0W9nKpEbaEVkMlYCsse0sSOPmwnDE5CW6cJ5U3hf8LSpgKhbpVkUNPZp5mVpduD2zAuMZrdtz6scgNw__"

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Space Ranger 3.0.0 highlights

  • Space Ranger now supports Visium HD!

Space Ranger 2.1.1 (Oct 2, 2023)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 707 MB
    md5sum: 0ef64524af2735bd2a0fc9eef5a605f6
    curl -o spaceranger-2.1.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.1.1.tar.gz?Expires=1745719842&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=orlWli5egFzKmMlyO8nqoh7nxu8yQPrP6A0T2NdpdggG0ZYw6DxOdLbi~AI7o8ppG20nxhiG3I08nElVfzQzDlgFI2zaPHP9n1eT4v8h26S-wXnhsy~4SedPecyeuUjL~dGikr5~BUKO4ctBQQLFdmCp9de8KDC06Cgkwvn2cbh~BXK8xoVY7ZN7Ytm92Y-DBkqpHwFtoyEb5lCZgZ7PkuBmKkrIWbR~PiGaPHxIUO1WAAqqZsEPeATBErJJ-FaATwDWhGTB9UlJEBpYR2yhDZSSIwbqZ0uwXTQRFybjd3250UmP5IxCxsOlrvKjjrq4dB-VW8irYfOPWHZXDkyHuw__"
  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 465 MB
    md5sum: e1204bb11b3589bc5d5af244b51bfc18
    curl -o spaceranger-2.1.1.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.1.1.tar.xz?Expires=1745719842&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=LVJsOt1gSNYPtmB0i5QipBaw~i7P7ZjqwwmwAWSQrwCJM90kgoIpsr6F5xiQ5YI18WiFf-zqOWPmMklBv-d-t5KYCsBhcCcdqtAgzVcL~A2PgVXR3brPpGin~-17oaWo-kA7BW-yycjgnLPltDNECy8x5lafmy~7lBJ6vz3nVpCYEY6nZVkT6GK3cEG-sdkoCjfbpGuKYsDczn6WbYO4oTt6X1hQQX8v6gxZOiv32rH-Uk~fb6HdDNFEvErTCC73uWHU2VGRLFeP0VrCQXim17O70r0vUIQa38s2sQMYi8WxiT4uXx3RNZC-Obq4EMifPvtdytdxIQFBQhVKzLtrdg__"

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Space Ranger 2.1.1 highlights

  • Fixed a bug where 8-bit grayscale images were inadvertently turned into 8-bit RGB color images for tissue registration.

Space Ranger 2.1.0 (May 16, 2023)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 707 MB
    md5sum: ee94c453c44770b2b69d6be46b948e3e
    curl -o spaceranger-2.1.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.1.0.tar.gz?Expires=1745719842&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=NpHMwSHNbP~QmLwINhuCkjknG9ARziAZEh4ouSwJAtoiF9goo5mTFUM21djztvLK5I2STLJI1v8v9Kjg95jRqmnQyB0NY2N3lUyvdt-N6i8KIG8OsZpjg~QbepOvtBKDzyX0CHmo2~8~vlPRBOHgBw0EGU1n7nG0J7m8e57aD1B-suGwP~ER9rNK0oFe7BS9v72RTcr4eKabGIsQsXTCH84EzcS~ITnkeqUd9suY0k8Ftqa9DfijCjv~nD2yBIC7BoPQ76lDcWhxJfGcyUDsragogueVvSHIbcFW8u5SbQZGAskAspFaWtsrKsDaplxNPdYYCxNKXD3v3xqdMGQZxg__"
  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 465 MB
    md5sum: a0d90129a81c41cbdd728e23a4d25161
    curl -o spaceranger-2.1.0.tar.xz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.1.0.tar.xz?Expires=1745719842&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=i~OVxeUOvpZ8gEaPfzaVmX3oNjIJBxA-~VAhfrBI01VlDQMRk2B0uVkE21puqXLgKZwOCp1RHOhS2zjscl2-txFUtoRmiaBMQe4V286sSXEtHBtr~7bj8JXG2P1EuSZJ5ZoSRTTNQJ34CTUcKgsAnRsLP2y3bASuxFHcZuv00V-f87kFLPzPu8OiE~yrZ-LE73oY7NT73KIQsNMeSnFiUXl1KOhZ-g6Y-KIoIY9SDCVw-U5I6PH7jKLg6onFRyGEfkmbX~1EY9PycOd14xHOCvfuo3M3yisumzc6slO~w7nNwfepmsK9BcZ-cpyq00dsl6yf9CRGCCCyq5knf82WYw__"

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Space Ranger 2.1.0 highlights

  • New feature: Gene + Protein Expression on Visium CytAssist.
  • New feature: Reference-free spot deconvolution.
  • Added support for bigtiff (btf, tf2, and tf8) image file extensions.

Space Ranger 2.0.1 (Dec 7, 2022)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 664 MB
    md5sum: 26151804338ae4d4b44151232bd64b50
    curl -o spaceranger-2.0.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.0.1.tar.gz?Expires=1745719842&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=EHS8Fu0C7OM3nQi9caqEg8ZfG1Bgi~lewVdJXsfUzXERRrOwmeqPSrzSMLUD1O7TGv6~JYu-OGzRBviazhtVDfrnW7J-GVP4EeCt~naYMSF5GLyF7~Z3CE~8LGGzDVwUlzSAOdpICioSq3cHcbLOEfTtFm9A9xXxs8hnZWaGV-bQEAF-R-eEP9SNClVt-G-x7URnAzwB5swFf~qWMZRMuF2t2c6PJnFZLByQgFuIQkp2lEF6QRG21EsLae4D1BKbszyTlVfe4PdtC0Vn~bHlEk05gpduJMTOpjC-8pBHmCjKwHAtdoBwnaXF1yD5kt2XPJ-689213rNlRuMXVDD9cg__"

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Space Ranger 2.0.1 highlights

  • Reclustering workflow now supports generating a UMAP projection in addition to the t-SNE projection.
  • Visium Image Manual Aligner now includes additional support for images with difficult to detect fiducials.
  • A new Spatial Enrichment table which allows users to sort and filter features by their Moran’s I value for Visium Spatial Gene Expression is added.

Space Ranger 2.0.0 (Jul 18, 2022)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 662 MB
    md5sum: aec9ec128c7bc9fbf9fd6d31aa390d4c
    curl -o spaceranger-2.0.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-2.0.0.tar.gz?Expires=1745719842&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=cFNbGqFwADA-HLaLmmoiP1pUEFdiFz8tO2afczJN2idWoYSUOligz5uIZYpZfwZZYxIb8zFC9BFRbF8guLHE5KwyIRRhd8y5QutxaYo-kdrrAzkR7CQAs5MD4vqiXTlOnhfacIDap3YJFBNTK-~p2v05H00WSCBvY70FkP2ZTS-9rBCcmafxp8k-3bZVa~tT4aAmu~aijkHdMqv9LliWQ9NsYplD7LNLjgOtuKsxDYr8sUGbIKRX8ZQbZ8ACi~G-JWDlzEOOUqEqWQpz51NKuD4Vi4JqoF6g-9k2gyEW39z6bThvYiURTt2yDvaQXBm5eYfC0pQVEjX9PhayJmwH0w__"

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Space Ranger 2.0.0 highlights

  • Space Ranger now supports CytAssist-enabled Gene Expression analysis and includes image registration between the CytAssist image and the microscope image of the same tissue section.
  • spaceranger count now quantifies fluorescence intensity in the image at every barcoded-spot location.

Space Ranger 1.3.1 (Nov 1, 2021)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 1.2 GB
    md5sum: c2eb73125d9ee731fa825ea3734be1b4
    curl -o spaceranger-1.3.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.3.1.tar.gz?Expires=1745719842&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=kUG1oD8aa4TaP-d~Q6aYILAf2kNDM5EGMob2azJjk6H5P6wmFb58FQpTVlh7DOv3WFhR4dGz2UVNWEOzhSOCMKZX58nP5qGJs~SFe5s~5IwcUqS7P4GZ6E-q98KkRq-oNiw6I67NZhKpe9NnE3~sUKeQALCtJh5GS7980ul~ycBup3DAZag~DvsryhijTPrjYbih1m5an1PN5Ft1uoNQjCNTt0F0DFoVtkmQUgxy1~sXxZg12TvvLEsc5Y0dC2EoUKvSWKeD4vMdle9iC0FejIq~BAi7FUmfXqJ4LlsZR-Pt~IcgUsO~y0CLJUrzYiIIFZEpo-Dpice89W-u~~Oixg__"

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Space Ranger 1.3.1 highlights

  • Adds an alert if image alignment would have produced a different result if the --reorient-images option was specified.
  • Update warning for low fraction of reads confidently mapped to the probe set to be more informative.
  • Unsets additional sysconfig environment variables prior to pipeline execution, which may otherwise interfere with the pipeline conda environment.
  • Fixes an issue with mkfastq when bcl2fastq requires LD_LIBRARY_PATH.

Space Ranger 1.3.0 (Jun 9, 2021)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 1.2 GB
    md5sum: ede7f98db5adf7785e35ae0508c48f74
    curl -o spaceranger-1.3.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.3.0.tar.gz?Expires=1745719842&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Qcy8HI2sVBDNpWWorzDI2wx~nXUvIkNmlvKuqTKBN-SirxqBJPv3QLGUbUL9GRtgemDuUUzfagWm2QsLk7QUKg8eIQNL0b11Jiy6DyEJf939tfKzA0mdnOSp9RQISbqoiY1pZA7gDo2Xy23rxoAtG8IlGtGG-UFEdCUtbtXfvBSk2YGhB87xbS1acNd2gkLR3BWyA-gTBO2aEcboLibny1zprRcDhXXD7~w80Ma~v8lN5nZFbfgwJbvWKiH2lerGMD7a~fGf6hFUWQYX-Znn~iOD-gEojK25o10YIUi-KGy1n3CXXhDFzbmWlDabenguxtDQa2ak84o7lC-sRS7lBQ__"

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Space Ranger 1.3.0 highlights

  • The recommended operating systems for Space Ranger 1.3.0 are CentOS 7 or Ubuntu 14 Linux variants or newer. CentOS 6 and Ubuntu 12 are still supported but have been deprecated.
  • Gene Expression analysis from formalin fixed paraffin embedded (FFPE) samples is now available in Space Ranger and is invoked by specifying the --probe-set option when running the spaceranger count command. Space Ranger 1.3.0 or later is required to analyze FFPE data.
  • Space Ranger now calculates the Moran's I spatial autocorrelation metric on a per-gene basis.

Space Ranger 1.2.2 (Feb 3, 2021)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 1.2 GB
    md5sum: 3280a085714ce7c894dc14b76312bcda
    curl -o spaceranger-1.2.2.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.2.2.tar.gz?Expires=1745719842&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=WmLJlGErT5ucRj8ehl9~j9XwGxx7An2rkvl5XQ-D19FV9RPLHHb4DUczOMzIQE7i-99FaSlzIh8f6jSTNv3D~gxGEY0iXS~GMsH2K-TeLkkWhXyNkBwULjSP2fKnexnWKQp2W33Kp8Qt5b6CwerkgX5RJ-mbkXJHhTDfS9P3JnsLu2MVh1Um-fui8~Afgh7PNAb-24p1S1WrOCCD~RtgORZtmwLWlVTPeebbA12n8IvLc5~VlYojCa2D-5iKn4L-JSnyGoE9fWnoLQ2gfUrXExxDgIlFLhl196t-CKWQvBkOJDYzAL2ZU0QV3McQ-ccX-FDlJqMZ-7BOeQNQ1KEIIA__"

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Space Ranger 1.2.2 highlights

  • Adds support for pyramid TIFFs, or TIFFs with multiple pages of the same image at different resolutions.
  • Fixes an issue where targeted samples run against new references would fail preflight.

Space Ranger 1.2.1 (Dec 10, 2020)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 1.2 GB
    md5sum: c24ecfc95c5e4f1c268354c5934da98e
    curl -o spaceranger-1.2.1.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.2.1.tar.gz?Expires=1745719842&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=A3hLCFL4p2e1T5vfbDbwAgRFGs6s~8Wp6QeHzZxBl0CXAc5SJXUSJ5fi-F-ssReOZr72kkh5Ma1zLJsh56KiDtMAzEh8nSOlXaz2OqHjnabUmGhta28Q-3iHPGq~-rg-SlXBoSCQVDZYCZgmpwa0X6Vf~WCcmSNrMve21Cy95p1gajUQxO1l0pw9umLpC-phK8J7D~YWejxzfxMu5IGVBm1-si9WL~wTTmkMIhww~sxPIrNiCFqlTw-4btTM7a1C5TI8DEAV72xatdrLg5LSdmgUCDnLSvexYTN4pCPyJebFBfSGHKU~lUsr9k4ug6LDNOaFCBxyz3~uNYOGaYoaeA__"

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Space Ranger 1.2.1 highlights

  • Fixed an issue in aggr where files would fail to be copied on NFSv4 File Systems.
  • Disables multithreading in mkref to address an issue where mkref would fail on hardware without AVX support.
  • Better error handling if the pipeline fails due to a missing .env.json file due to an incomplete copy of the application folder.

Space Ranger 1.2.0 (Oct 27, 2020)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 1.2 GB
    md5sum: fc21902700779111afc3c813bbb0ff5e
    curl -o spaceranger-1.2.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.2.0.tar.gz?Expires=1745719842&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=TxjK58SmdOaMIxgZu-MUREqH6I1Dmhq6yztGzZYIEZbd6elvfAawFXRc-YVsiiiWc-boYUkbEciNbsibqaeBo3x5yQO2BzKWJ4YbYb8ng-gW4XOFMpdf~TQ5bP6rSKSyLw2Hiaa1pTy2mJ07WE3q1MPtxTQ4J6m8oi8oTJovN-3NZ25DxlTSMmiOOwdvcKo-N5cwpZbTDWQeM7lKVXnacZHfgrXvhA-0oZJDGxLamB2R3Tu32FK1Erh0t685-32NsXux4IuKM3DIlTfmId7wphmLax9iTIpUyHi7B7FViMwN201MT9~l2JbP0G~UUBMYsRFjI2g~ms0r4LYl30v9qA__"

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Space Ranger 1.2.0 highlights

  • Targeted Gene Expression analysis is available in Space Ranger 1.2.
  • Introduces the new spaceranger targeted-compare pipeline for direct comparative analysis of matched parent Whole Transcriptome Amplification (WTA) and Targeted Gene Expression datasets.
  • Includes the spaceranger targeted-depth subcommand to estimate sequencing depths appropriate for Spatial Targeted Gene Expression experiments.
  • A new command line option, --no-bam, instructs the pipeline not to construct BAM files.

Space Ranger 1.1.0 (Jun 23, 2020)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 1.2 GB
    md5sum: 708b93997295db31bc457b3d9af79ca2
    curl -o spaceranger-1.1.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.1.0.tar.gz?Expires=1745719842&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=dp3ShG67R-Lnjwc3q857hmeltqHPw18lBm1XYbfGOVe05Sa~68ebq136avR5rZKVMuGaAMZtWLbxcBsfvGZqYF2UHuofXOGj-SbfrgJ5EsMbBnMqvd7lhmNmmlaMgNE~RjybYrs8kCoHcadXCR0kDuBHF4R7wV9pgUfYbtKT3YnCFu93E7-HlLu0QgNa6hK6NynvNuRNfRyT6cfGAeBkiYkkPQUDdCR~KogJhkpFwLsw12RP8k80WAMAY-ar9BRzsAWycIPzjnrfQjjnqYLkvT8scohmtO2C4wrolkFRdjsATplO51ukjlM9SnEEIXv-0KmJcr4M10auB3M-BSAwsA__"

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Space Ranger 1.1.0 highlights

  • Support for fluorescence imaging input such as IHC/IF.
  • Aggregation of multiple datasets.
  • Optional automatic rotation of slide images.

Space Ranger 1.0.0 (Dec 2, 2019)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 1.3 GB
    md5sum: 5cc7fb86d0cbff7df687b11575efb7cb
    curl -o spaceranger-1.0.0.tar.gz "https://cf.10xgenomics.com/releases/spatial-exp/spaceranger-1.0.0.tar.gz?Expires=1745719842&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=V8S3-Qhtzv9BPmtV~zqlumQYQr38VWZ64f~ceR7ZXrFqI2xcvP3FmlVA19q~6F1AtaveRZI5KIsclyw3vwwS5gNTbqncBBIA6l6kO532ZHF56SU7C~wM3sYavLhFLRRDOPOmoBNZChnYPQl7ZWFBT7CBsWbVJT9j6u5fJ0ozDP-J9FKRW52A1YTRglhwfZBvZyGwrijef-Sz0Mb7UMHeGD6wUCbVPQKYL6YhnDuosAL4j2x7bz2wc3zuWCfS0Y-Kvk-YEpyhznfQu2DX5RwoLluXj8VPC~DISXw6VfApxvK9sEuJvSvgceqnD6IGlf~eCNdjpkCMoBN8qp3qdS60Ew__"

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Space Ranger 1.0.0 highlights

  • Initial release of Space Ranger.