Example Xenium In Situ Gene Expression datasets are available for download on the 10x datasets webpage. They cover a range of tissue types and states, pre-designed and custom gene panel designs, and Xenium Onboard Analysis (XOA) software versions. Several include post-Xenium H&E and/or IF images and image alignment files that can be opened directly in Xenium Explorer.
Here, we provide datasets that have been trimmed down to a few FOVs from larger datasets. These datasets are intended to demonstrate output file format changes introduced by new versions of XOA pipeline software on the Xenium Analyzer (XA) instrument and can be used to test code dependencies on these output formats. Since these datasets are trimmed, they are not meant to be used to draw biological conclusions.
These datasets are licensed under the Creative Commons Attribution license.
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This dataset is trimmed down to 2 FOVs from a sample prepared with the Xenium In Situ Gene Expression with Cell Segmentation Staining workflow (CG000749).
Panel Cell segmentation File size, md5sum Xenium Human Breast Gene Expression Multimodal 379 MB, 4632914eca973a1d532231ea646e10cc - Click here to download or use command line:
curl -O https://cf.10xgenomics.com/samples/xenium/2.0.0/Xenium_V1_human_Breast_2fov/Xenium_V1_human_Breast_2fov_outs.zip -
This dataset is trimmed down to 2 FOVs from a sample prepared with the Xenium In Situ Gene Expression workflow (CG000582).
Panel Cell segmentation File size, md5sum Xenium Human Lung Gene Expression Nuclear expansion (5 µm) 278 MB, bf9c5e6762681b81eab0a19d3d590381 - Click here to download or use command line:
curl -O https://cf.10xgenomics.com/samples/xenium/2.0.0/Xenium_V1_human_Lung_2fov/Xenium_V1_human_Lung_2fov_outs.zip