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Previous Versions

Xenium Ranger 3.0.0 (Sep 4, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.9 GB
    md5sum: 10e28b33f0236a5e62d615dcd921a9b1
    curl -o xeniumranger-3.0.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.gz?Expires=1765510464&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=V2To~bA9gsLk9FW0jh~8tUwwV-eT8cAvPHuj93KmDKhVrI9FyNAWJI0QsrwduW25eeRzR6vf-5FGvjwgOdWSc~v3xYHpggWwbOKTpZwlFV~dDZT5HF1Kwq54BafPfw4emP0Ijq8xLN23wswyrn9AoOZGD3R833UdpEgt1gWSn1u8vh-v-rWDRgL18jGs0KLMXRLcJz45vk8d~Frr2h0gxhJIQULZQie5UWw4IGEQyD0VDOKgBVpvX8-MA4FpBi0tBlfEouzIqLHuvuyUVskJxxnKSZn~dNrLQdIrEFv5xHAVkXxs2OCcArwVOar1wLSWcQOg~F7OWnKbbaGSJHhmUQ__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.7 GB
    md5sum: c31be85a7e19edb8da484c295f3586cf
    curl -o xeniumranger-3.0.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.xz?Expires=1765510464&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=j6ZLFVsVW2Oo6qqmfh-lBrj8TLeUR-3wwZ64KD5gL0BDIhBpS3BHCu9J3cqyCeEuUY5d6islNJdvJhHnX8uIRAQ-AdT2VKD-vCm0pzf3DNYf2IejtqRiGD8fRC~XcNZv5L9HxQnKFYne-afzIBwcYeSQh9ximgJgrzWItfm~ZRQIi-ysh5t7ByLiNe9vmHOeV0AI6VpIiYvG3ku5Z7sUjlLO-SgvmC~jWyxz8~AsYJGZUqnrv~pGa-CdEc4kjPW9KirXaoi-Jlf717qZtk9w~GDtmxqngPF6Zt5Eom07gBLyrrtOxZrxE0kMGDU06i3xcWAYgIJ~udVc7k1z5bUemQ__"

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Xenium Ranger 3.0.0 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Reanalyzed data gets updated scaled transcript view in Xenium Explorer and analysis summary features introduced in XOA v3.0.
  • New rename subcommand for editing the region and cassette names.
  • Robust to corner cases of importing transcript-assignment data with empty cells.
  • And more - see full release notes.
Release Notes

Xenium Ranger 2.0.1 (Jun 10, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.7 GB
    md5sum: 45d207dc432226dc003a31a287f5ec08
    curl -o xeniumranger-2.0.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.gz?Expires=1765510464&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=U77E4PsuHEnxekafNgApthnymUVorl7if2Z-XaSgQ8fYbCr9Fqa8QGpw-x-jJECsgsh2dvlA4lAIA4q9GmWnajNANwR0t82YLrEJ6OMH~sI4M20Vx8k0GXiL-7VsQuhzYnrupcBenB1EueqTEsse99mMR2ECihHiqmlxRkHWmLdHiivO8HUlRK-htBe8KZ8C26FR0eCCtqfUTtNtEYsS0bTZZPdPBZc1z6VfYDf7vuPb3Sd4oWUB0Ofifx-k7fnNXAB3NvcSNKVoIqV1bxKtvb8uyLwnR4zO6EMMvasOl~slGpdJ48pYyzWntsQmoXp27FfF63AVcU5UGKf-DXHXPw__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.6 GB
    md5sum: 244bdbb3d159ff557a7747c03ec487a7
    curl -o xeniumranger-2.0.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.xz?Expires=1765510464&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=a7Idv0G6eS6CIjfaFuJaIRzBRv-Ru9BYjbPcFuVfR~3HKm4GTxSZu8JLY6i2uNLmU4nxoxl4GjWbru93qwf6yoTAVCJYiQxJ2cMDItoEBptEb65LCdz8heINCd5Z8Ask3IOZQPxrBC194jNJX5-qp~cqlL8eRhISPB0Q0BCwIMqM14odH5u42n~4prOjzZSH1hBWCbYJaztrmn4xO6OlzopNm5J0cqHPzsv8w1OQE4HNlZFJJwJP-Q~OHf84KtNeZ6CByewL-Od79~7inOk-zZJmdZBDULCAu2FPdEOZ~Dk9EWZ7Mn5cX9L7BuX1wPa1cJ2459hyK2zr8sArqwqeUw__"

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Xenium Ranger 2.0.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Default nuclear expansion distance is 5 µm.
  • Enables reanalysis with multimodal cell segmentation algorithm.
  • Interrupted runs can be resumed.
Release Notes

Xenium Ranger 1.7.1 (Jan 23, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: 51c373964e46c041e08ba73888657edd
    curl -o xeniumranger-1.7.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.gz?Expires=1765510464&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=lu6wPqVz0C07FUI3HXg2SB3QA9N8OgfKFBc0P1A0P6v9k2y4gDQ45SfcZBTUx0KldmLUey1QiaE-~H9yXp7esYRFFcrKSjhjuGQ~nVTvHJbAWoiCnFz4vkApbN2N-fKAXIMJNvE-VbJWWXKpv4fLoEgcj-yTTG6dcDWSsOsgnwJ29wSVR00PDCRJdZZQnetvhk3qMmgjO1sX-o4hSri8~evp-yyXd-9KHwQ-wyc93A~fA6OdJ9gGLjgllyvDxxcvoUhViUF-f7VJA30zgXAhTueCUGAnlNy6bX~~Pe7uWy0bOMozVmET7wEa1jvPbWbjPXv8gTXSYblNH2W69pEfvA__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 43e6e4433303aae30973682dc5219f20
    curl -o xeniumranger-1.7.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.xz?Expires=1765510464&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=BAtBEySRa3uwc9bDpBbG5U8L5V1wkRBPMn8syjN7sjI-zsqKDbf8W7U~ZnOuBGfqNWV9XgmHIQkGRfyDfrXeGdN0Eglhrj6HhmHgl5M3FcEoWZVkrE3v4-NOG-IjyPAKviz957sZZK9QNP30WlOFNsvfApIR4Vw5eoil8ES~dllhn~iJ7hoekQPJ9N0gk9rg0E-UoS0rNpG2RhjcOn6uyr6g3VVj5d4YdvKfTF4UdjJBS2kt41OHBHLEkBwGxJBRjZ9bnPDSa8AY-Alz8kP9cJUUl9OqdsUAgeDGvFU~q36u7Cv3akcUuCT22qAeyNPG2BRb5Foj6~~PWRiZwdHeIA__"

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Xenium Ranger 1.7.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to latest version.
  • Image-based import-segmentation now compatible with segmentation masks.
  • Improved memory usage in the import-segmentation pipeline.
Release Notes

Xenium Ranger 1.6.0 (Aug 17, 2023)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: ebd970ceafc057668b9e664df310a5fb
    curl -o xeniumranger-1.6.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.gz?Expires=1765510464&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=A6m2X-fr2Bqh6dJDDDETlk~D70NbwNzks6XAUGAwcSUvLB3dnZJxomXcZjR8b-Mx7ajiqrcl2KAojf98SZyV4mhKE~KzRc5Ei5JqLuId238D~miqWnBe9Lywc16QrsG-wGdU3S2mdAJX1Ek0czMKwbGf1rrq4nF7fDphksOdHRqXgGt7zivLS3icvuOrjNfemqTXeTKJIm6n16bA1arcC-O-hz7XIMXIxwJ61ML3Dt7lDaFK6c91MF6XyiuNw0saThtQ4TAVpszkJaic4pyLbAv~rdbhz-7900bImPjx04SnBOYmwLM82OhmVUyNMFoZo5ffa9fZhSmuMH5EgPgIeg__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 6fa799cfeef91264fdc174ad43b6da3f
    curl -o xeniumranger-1.6.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.xz?Expires=1765510464&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=T-Semdi0Zd4QUYBVP5Ji7IdPS2mBn-vvH52DITzOUIJeDrLq83ambQL65Y~wKt2OCMt9xNA2ha8wPdRw0Uk3ZQx~-EveVUHIXcle8eHPM5wm934q~UFHNZQZ7xfz78YIlPnYP1jIRanxCpRsOCA3lWUQnlLDMXcfpWIhyX3iW3orBCTDaD3GxPUC-UHJusJjFFsDH1K4EAeFkqWDiymUFYiO7NH8qP7~m7kegv03UI~g1Vn7QfWep1Ry4RphwOgkXRsQtQhyvXsUKFHalZ4SbH9LpwJ0C-kzjSSNRhFT5NeuSWi4IwHOpNGL1xB-n7P-S~YpaRJqy9pnDfgIuoJGyA__"

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Xenium Ranger 1.6.0 highlights

  • Initial release of Xenium Ranger!
  • Resegment Xenium data with customizable nucleus expansion distance and the latest 10x cell segmentation algorithm.
  • Import community-developed nucleus and cell segmentations in multiple popular formats (i.e., Baysor).
  • Selected the wrong gene panel when you started the Xenium Analyzer run? Simply fix the mistake by using relabel.
  • All pipelines produce the same output bundle as Xenium Onboard Analysis v1.6, so they are compatible with the same downstream visualization and analysis softwares (e.g., Xenium Explorer).
  • Backwards compatible with all previous Xenium Onboard Analysis versions.
Release Notes