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Previous Versions

Xenium Ranger 3.0.0 (Sep 4, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.9 GB
    md5sum: 10e28b33f0236a5e62d615dcd921a9b1
    curl -o xeniumranger-3.0.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.gz?Expires=1760544138&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=YsrUnJQCgLuGyfvwlwIwmebPSx-XlXDcD6pqaHfA2BX284fZWclxMVqDyiHJCfwl8NaENVkYaxicAMvM5tNxIM6FOXBDHCNvGqUqeg3ISVpJrfC0EL-PxLebukU-cGrc7kE6w1gR4tureV1wdJk9YVwaFFoDsM6GmptCGFiuCVxeorrsneB-DiSA1CMLevvqhxuvIywN8AcvxgDcE1oylnzYfQwVpx-Ha2QRkYnucr-fhGBpT1F-FJDzieH5DyEuqXJEuxrIyllw9XKcJG2gfi1mmJ7-tePgZK6OzN3DDMRTsRXOc52jwC6eI-Lwx-uhgjmjv5RWfmpc4o9WHeeg6A__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.7 GB
    md5sum: c31be85a7e19edb8da484c295f3586cf
    curl -o xeniumranger-3.0.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.xz?Expires=1760544138&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=PFSXooryh~N2KV5oiH6CzzI~a3vsVIOyWVYh~X5sEZRkiqSYuGB4VXUCyQpTgZNWv47CURmb6hstdedaZNGltoBfhYcB2Sa5wywSoe4OC16SgzxRFa2lFVPBboazlfX-hojQs5aLkapSJzRR6pqMIvpkGIcuwCqZ-6tdGSOJCg3wNaYXPjNHDGhnHMwGoLCPggtfyhsshtqOWzCuZdQXLqTyjHtVPkkX9klsAsvaWtUYkaWF5qUiovzRMUurH5eDil05Sc~7rc53rU4ygqbGdebzsa5d2m~Wvac19j63ftHsZME~JVLrtCnckMyU4R7oJ1iqhJVGXIASjHYTEv0TMA__"

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Xenium Ranger 3.0.0 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Reanalyzed data gets updated scaled transcript view in Xenium Explorer and analysis summary features introduced in XOA v3.0.
  • New rename subcommand for editing the region and cassette names.
  • Robust to corner cases of importing transcript-assignment data with empty cells.
  • And more - see full release notes.
Release Notes

Xenium Ranger 2.0.1 (Jun 10, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.7 GB
    md5sum: 45d207dc432226dc003a31a287f5ec08
    curl -o xeniumranger-2.0.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.gz?Expires=1760544138&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=o0B34VZDTlrA1wuLJHqP0aFnyq27RS2WO5-6Bwp3ruIMxbMmWUlUVSUJK6aqsr2ZpES958xwZxNBBj5nlzNan59alVXaOybndTeml7pPb6mnMECBvA1Xls5J-Vzp2URzt1ZXwRYR9yV9WqDVdMukyC32JcisdgwBkb4SSiEtCjPST3oTpcW-TAwuqvO1Db-uuTpwBjJYxon8mHIAufnOHk2yJmxOlUbZ9r-XkuQs5g1fuOBAFnZtEvdOuDBxVwEBEbkXh0zdqrOsDNlYAdKkFK4gGVaevFNuCg74gWonBks1R6yg7bubVBtuXe4CzbDCRViwHaIs27kMudaFUreVBQ__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.6 GB
    md5sum: 244bdbb3d159ff557a7747c03ec487a7
    curl -o xeniumranger-2.0.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.xz?Expires=1760544138&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=cuUyCBzy3aHc5nbvWhtS62ocMZf67takD3~lDCMNrIlNXfgyTXdPV0LB~NESxZJbs1YDDG5xeLAdEQQpxvKTL39nByDbNfosb2IbLGX3sgLNoSJMHa9f1FBle1~KbITDH8dJ2vSS-TxunYluAWivhI7ltkxSAaPbQ1hTWJQ4kNkSv6KN-dP3dr99J5OAmeS5B9IH0EPO6OYfgu-hN60LgxLwxqVq2UTJE0mpoDiSxdD4HANyU-x5~5gU06zdl~V5~fSQDzZ-y-1bPSx3wB9y~liMViaQeUjn4yHyRfW9rL~QINuHVtpCiyy2W40Zk5wVmwyCpDi7AdCi6ZxW~YX3Iw__"

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Xenium Ranger 2.0.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Default nuclear expansion distance is 5 µm.
  • Enables reanalysis with multimodal cell segmentation algorithm.
  • Interrupted runs can be resumed.
Release Notes

Xenium Ranger 1.7.1 (Jan 23, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: 51c373964e46c041e08ba73888657edd
    curl -o xeniumranger-1.7.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.gz?Expires=1760544138&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=ffDQ1-qTEoYbWGLCdRlpGzTp6xgbf6-4GxtN177eVVWpv4XVQVwv8x1WXzdmNe-0ebpGWY4A7cuTm4goIedtPCDJmyQ8~xf0zx7jIfg4uUF72yOoRx7fT6HTZucTXTrTGZD4XYM53tmJuHAH4HdwrQn8gNRjR49EC7SK53lXUDuz98SBMuppx3eOKYKX0cljr4Yb5M3av7Oy6bFeAJx8uJMlk3S9LjYgn7z814TdGIBgy4J8H5gYrHtxunMsnism8HNKflsf~mrOmNW-wkXg4UiTh3F9kHwtKlctkYheFhFD~EmGNeHIbDbvHeXooCGZePJlofGHGOaW0zb20kZC2A__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 43e6e4433303aae30973682dc5219f20
    curl -o xeniumranger-1.7.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.xz?Expires=1760544138&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Eu1WoS3pTrHlGSEKjT7p-BVafQ3yvGXpUhGrL6DT1llGr-0vNzAdK9Z-421PatCJzF543ZUD8KjWNdPAY3Ua8~c~9Jdb0JrDEcj3X1AKZfYbgfWS55i4c26AMHRJXS29HMZu34qGUnvDfEkzL~LVKzae3dYcdZ2JyYB8jnfbo1IH86HMDiXnYJx2pb5~yPUhKFRXwgLfntpwiEilMX3Sltfye4yASRAQHCRUGEZNBIrap02DTx8kTFyuaDzJMBgp6VIVv-dhWKDBfMXIrq~EeNOi4NKvImL2iQ1zdBZp~qWbEEtQxXK5I26lF57urtL3stlVuAyrh2ggKcWBM1U2JQ__"

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Xenium Ranger 1.7.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to latest version.
  • Image-based import-segmentation now compatible with segmentation masks.
  • Improved memory usage in the import-segmentation pipeline.
Release Notes

Xenium Ranger 1.6.0 (Aug 17, 2023)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: ebd970ceafc057668b9e664df310a5fb
    curl -o xeniumranger-1.6.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.gz?Expires=1760544138&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=bmi84JfTkGxN6AxwVqBIKxc8t6v9xz~lMZiWB0cLRwKTpJqntkPa3vS1TllDcjiLHK8GrzjpnM2-5B6PnbhuUNtqGRQ3-it12vjYToLDjqsEgIGr-0lEfAZRQJbwxXwGVHn561KFkZ~OPuyf6XNcm5HeB6bpJYKk~HGa55hHXX7EZMv3JstYi~Qt-DqmGsKXnGxos0RykGzUNnZ7mvyqa53-281-a~Lze2TPdKKoRL6z2oTgT62H3hD6Dl3a36YNFBsGy8IVmYAijLcbkmg-m4mcI~V81CFQfT9768AdhvPfi41nxna-SR63tsTufOQ21WFFkM5du2m8m7cEXk261g__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 6fa799cfeef91264fdc174ad43b6da3f
    curl -o xeniumranger-1.6.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.xz?Expires=1760544138&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=jwnYydyVT9QX0nGDWzsc19QQv7Ymbttv1jh0B1yP8UMBlqUGM2QKvcPIS9ZEP0Rur8xQUPAITAG4NXXztJ9nZgVNC3oz-mKG6tP147nnYi2HhTU3NQTSQH2piUTOa-txoCxpuhzXGs55Ks0~DuG1lC45ORXDeVSppIbDIMGgH9az~2y9hjBaTpjpjhSBaq3~9J68xGOwWkA1V9vI3e424hAst~3FViRSvlKdSk6lLvKRD0KAAHBIyCynkWnAWGvaceCHt8a6FH8PjjtMWcgAFZoHbgM7~EssFJfJi0iU2CGtRTXEQxZ0w5KNmozWRGHnteb2IB9GAe5t4kJLysda~A__"

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Xenium Ranger 1.6.0 highlights

  • Initial release of Xenium Ranger!
  • Resegment Xenium data with customizable nucleus expansion distance and the latest 10x cell segmentation algorithm.
  • Import community-developed nucleus and cell segmentations in multiple popular formats (i.e., Baysor).
  • Selected the wrong gene panel when you started the Xenium Analyzer run? Simply fix the mistake by using relabel.
  • All pipelines produce the same output bundle as Xenium Onboard Analysis v1.6, so they are compatible with the same downstream visualization and analysis softwares (e.g., Xenium Explorer).
  • Backwards compatible with all previous Xenium Onboard Analysis versions.
Release Notes