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Previous Versions

Xenium Ranger 3.0.0 (Sep 4, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.9 GB
    md5sum: 10e28b33f0236a5e62d615dcd921a9b1
    curl -o xeniumranger-3.0.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.gz?Expires=1751900443&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Xjz4KupfyHC0intJku618ObOb5Gwj0kLNpskSw5mmkOiOzJXUW8lQM3jkdEE6q6h8M6sbgoK8FEb0NbQjC-QtjkfG5MkHnRgTyXBzYoc3U1kD6ctV0dEhAU9vhQE-hjcTX-Tflw4oT1i3n7oaRsvzTwV39-yONEUUldHETuAyYEtB2hxXj2tLXGpLV76olcsBTWaRJvIym1X3W5tzMeL4naks9413ziWJsalTHszOcSXaULNP-XSsD31HXqQbTf4QDiQ4IykZWLewWLYx2K9HST720eAZ8fOCnpc4vuln~Pgpxnd7ceEw-uU13DdKsakax3-WR2ey58wUhNS0kr4Bg__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.7 GB
    md5sum: c31be85a7e19edb8da484c295f3586cf
    curl -o xeniumranger-3.0.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.xz?Expires=1751900443&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=HH8DIadaMQ3tPUlQ7rwpVV-uOTnK58L7Y86uAI5Qe18cKDfz~sfB8myabogKwl56O6B2b9MofINiueWD1Qi3I3fqw3JCGEkyQWrrbXIAp-W-A31TrNXIfESw50jqoWsCgBooZ8TzpfScqtUgsLoQYihOc0iiQ6rF0~~Bp5AF-RB60BKDuhCNOPMhZ1O4ncJgLSa2P6Afxf26eRLrnw1bQ1n7o5BpB5FOMZYHT4tc3HaA2J8VZFSkIsHsOxippznWjwAe3voviUfJI5e~EopDRA12wnhUTPavznL-5ldO~SSmluT9XGaKOibVjmoXaTOLJksmUhmY5wk0GrO1uKCABg__"

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Xenium Ranger 3.0.0 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Reanalyzed data gets updated scaled transcript view in Xenium Explorer and analysis summary features introduced in XOA v3.0.
  • New rename subcommand for editing the region and cassette names.
  • Robust to corner cases of importing transcript-assignment data with empty cells.
  • And more - see full release notes.
Release Notes

Xenium Ranger 2.0.1 (Jun 10, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.7 GB
    md5sum: 45d207dc432226dc003a31a287f5ec08
    curl -o xeniumranger-2.0.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.gz?Expires=1751900443&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=fvfKJMk0-J6r5UmLwoSUY5bvF9vpO8FqcCeoZYg73jRt0q50-e6VWqP95nz~451-CUUCMPibs04nc-81UVgZPgAPXdCDchYff-3h8DMARYLBUp1ZzJDfK3ZuQc8MQoz1yO5A0fUG2f2q~5FPCl31-Sw7jHVa~gGpsrkAT591aNvkc0WBMPoZ2ctNDuBCJF7SfrWuKKIO2STW4SCdPiDdY7h7p9O442GCKvRD7prwerU6Y2h6bHzJxdJTtimYVUJoqCcOCoPDJNFftaE6ERuF~f1pJea8Y3hXeMs81R~SyRgFLc4vLx9FhYD1GLifjQjycqMEOh5J5Huk30zhQYhHow__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.6 GB
    md5sum: 244bdbb3d159ff557a7747c03ec487a7
    curl -o xeniumranger-2.0.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.xz?Expires=1751900443&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=A-RyVYaOfR2nxMWMCi7WsEtlctAKOZc86uvDlw1Go-Hi1-fNHitWuDwqlFCuRgAqoMbh0GCG-kgxLGYmx16ZkLGjdzFO9H8LAoN41yUvPnLSrVo6gm6sCsNs2F8qrHAIZbgCzQsWYygyH4SPQNHSbJyurY-lChopCIlvX71vFiePIT90aFAQv6yu6jAca4hRlsPGA-8jb0HYu1F7UPKmQILcopIC5YGmn3MAefYejyiCwPGsNHQklHdZSP9BUfRbhrrdcwRVYn9WPgLCFl6WNpZt4wmMgdTDW3qW8gJfEa4fTT3TxK39j~VQq9IgTxBeUwrT95qRPGrGyEMGBiuWTw__"

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Xenium Ranger 2.0.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Default nuclear expansion distance is 5 µm.
  • Enables reanalysis with multimodal cell segmentation algorithm.
  • Interrupted runs can be resumed.
Release Notes

Xenium Ranger 1.7.1 (Jan 23, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: 51c373964e46c041e08ba73888657edd
    curl -o xeniumranger-1.7.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.gz?Expires=1751900443&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Rh2njJdkVv1IC03l5E7lWgkESE8sp5T72xg3LoMGmKauw4SfH8h3Km904ju6lCDW6CtIZAE-01xz-OtBxqSE-jhkzlWSY2FtGnOGhryuP-D~cOp7rsJTiQqNt~MZrBRVwVoOm4sP2pAs7I7Ygz0l3OlgfWMZqySJI94jNBAnsyMNxSjpR~SQg3ofwtVQkTOIk0KTxobrPBJ7787Rr1CsaNY4jru9mWOaWJK9e4g2nE7KX01Aeptva7E7Jlj58gVNP5puwT6gpfApx1FbbMJTxz2TVSZwLbzl6vfvdNiwhIjgVDir81PbYBj3ijNP06bOpBt2iJHS8gykvgF0vs0LZA__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 43e6e4433303aae30973682dc5219f20
    curl -o xeniumranger-1.7.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.xz?Expires=1751900443&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=SbuFPnCE993G7AXLsKd1wyz~Np2AYENCNA-oGc~RGRFXmNahHLEMCGYnw~dGICCsOr6TYDNBlUyVpvtt0YoN0BoSGc0LinMR3M~5mMt9bM2Ol9RB-nJ7nnUPAxpjgbFkqdV7myVc754KsTBMcasonD7sR64uHJuAGwlyvH5PK7xbwww-SC5QApHErVf5nJFMKUmQmxrtuo-WxuxjaYQiU6akd5MQ7lCRzevenVhMqdwKnV0hCS68VDxMDjyZf5PM16AGOxA2ychT-XmvgFTYSNKz1LHvhyS2Bf7J63akAm-4j4WMJhNfYyPd3P8ZRcmX9HnjtdYcp7b~hs5oepRMcg__"

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Xenium Ranger 1.7.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to latest version.
  • Image-based import-segmentation now compatible with segmentation masks.
  • Improved memory usage in the import-segmentation pipeline.
Release Notes

Xenium Ranger 1.6.0 (Aug 17, 2023)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: ebd970ceafc057668b9e664df310a5fb
    curl -o xeniumranger-1.6.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.gz?Expires=1751900443&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=kNkzF81pKbYW4E5Tx3AfZyEq-HjeD~5zUvz6Xu7bjoKt9gNEMxiyjFg2dEzjy9lr7RbXra3L2LGCp6dDEd~dggjqZsmdIk-7nEE2nRWYbFmgqPgOtAvgclkxMtjUtEDDvCvlvWtBXf7X8bijcK0QBqS5ybhNvzW5C2KMlF2a-985DbMIAsXv6AcwJ7WtBfMYQJA-KGE3Z6SGmKM2yoUuKZBP0LX8XalyOAPfW4y6UGygOxATKrouC7N1c1ilvd34XvhroTamZfJ6VFkjKXe6N4L7m8tBNJowEgqwDDDImiOcycL-Syy0N2IW8VrjIj-qUKNpuDi1xnuAydF79Udriw__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 6fa799cfeef91264fdc174ad43b6da3f
    curl -o xeniumranger-1.6.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.xz?Expires=1751900443&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=eaNjaO~91dPaidc4kuq1OwHICRHnPZUj8H2IlO4lX2jRetxArGYTLvb-5NQOfih1OkH2OYbxKQZPFbc3gwBxl13Hll8aqGCULJmpTt7IeSfVGG4ckaUIMPBpWHKD-qFuNUzmV5Ck3xMEIAuenfbFBvfW1JHf4JR7ehibDRo3-Kz6o255xZ~trDGK-AJ4UeTheE2rfYV5WiwWhrtpLx~fdq7GgRoHAgplsPhXYuHeZPAFZ~SpcfmWNambHFVjSJ0fBUtRyfNICB6tJLU3rFP9hSDASYr7C5E-KHh~GAPC7jtJhvcxQbAY-SgyNhN57dzEEnejIAMBKjo5DNLB6ZtUgw__"

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Xenium Ranger 1.6.0 highlights

  • Initial release of Xenium Ranger!
  • Resegment Xenium data with customizable nucleus expansion distance and the latest 10x cell segmentation algorithm.
  • Import community-developed nucleus and cell segmentations in multiple popular formats (i.e., Baysor).
  • Selected the wrong gene panel when you started the Xenium Analyzer run? Simply fix the mistake by using relabel.
  • All pipelines produce the same output bundle as Xenium Onboard Analysis v1.6, so they are compatible with the same downstream visualization and analysis softwares (e.g., Xenium Explorer).
  • Backwards compatible with all previous Xenium Onboard Analysis versions.
Release Notes