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Previous Versions

Xenium Ranger 3.0.0 (Sep 4, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.9 GB
    md5sum: 10e28b33f0236a5e62d615dcd921a9b1
    curl -o xeniumranger-3.0.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.gz?Expires=1750090414&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=UdmAAbV0v9tbMzpVoKAOt0ZCs-VVCYVHN9JWLORNh2tLgdGaWlC7RSqdrChYW293e4nRfYuCd74~wCoKQBR4CeE8PM37C9w3jq8gWv0cmcRq2Jbn-QiEdtaB~TY6cwX9zUYOB6VE5x-TSds-xbOkXInJ7sjvp-8-nlToL56V-sgneH2TgsCQy-hdTaGX-KsW7HB2tDpOxqyJMvPJdZYo41UL8Tcl7JQimkx2f3E049GE0OR4anHeUeGv7k72OLfdtNS33xPIDXhboQ1NHhDQjHv4IMskZuCsCQwt-9OmUPaGUEW8toafsvmr92LluYrlbf9s~sLwI2cQxYvpjDcfNA__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.7 GB
    md5sum: c31be85a7e19edb8da484c295f3586cf
    curl -o xeniumranger-3.0.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.xz?Expires=1750090414&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=dZ2~wLcSzPPzdYiCli2gqBb8Xl1mLpQVS6Ag6bA7CjJaFyelnA9r6Nk3CU5ZGZlOuw98YPNByMON544-KyBxn2bkdzdfbhvOSM3YUPd8B6M-cNj082b2oRncl0IhdB9oOtivkgS-Mf8Tif4INm2E7LBRKBPv8oHFkZH330nEyh2JMXGClrw4iRMENr5f7quIlgjUqjVgtFFkgv86c7rCzzPEaY58jbwUin47g6HFi~gGov9nwEUxvDld6fZHQK-YJBKjavWqvcgptRytQN3mnM6H~PxC28jfZYkoog~KAEjSPMcgftqCKjkm4jNV3KdaES7ORRnAuqhMashT14Tb-Q__"

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Xenium Ranger 3.0.0 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Reanalyzed data gets updated scaled transcript view in Xenium Explorer and analysis summary features introduced in XOA v3.0.
  • New rename subcommand for editing the region and cassette names.
  • Robust to corner cases of importing transcript-assignment data with empty cells.
  • And more - see full release notes.
Release Notes

Xenium Ranger 2.0.1 (Jun 10, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.7 GB
    md5sum: 45d207dc432226dc003a31a287f5ec08
    curl -o xeniumranger-2.0.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.gz?Expires=1750090414&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=YbvGuXA9WhUA3IMZfgCrXaPdICfz9haui9bRchUINA7-tC388W2RGUGsbuvjo9Sq9BqW5MEOYkiUX9yxa3XDm3ZAQyfu9JlJgDs-wSoPVQU74zizSF3xjTo5Y~XTWgoDbfJy7WOMdRdJcyUio16tjqX1G40yXVWt0uGkvgyYo2idK7j0D3n8qALRvRlpQaYvDHdnyRfnIahmajpjTClKat1bkKQDlp0bEsAkMRnZb4R4b6h4QDqpXiIxQbPnf2XeNe7N3CF3IIELjmyaw9R9sfGE3aYv6M9GZheJYtwTzGSp16bPr6bqHDKVaQ6Q9Gavh82NI-C6rG-M6w8pVQ4rkg__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.6 GB
    md5sum: 244bdbb3d159ff557a7747c03ec487a7
    curl -o xeniumranger-2.0.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.xz?Expires=1750090414&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=crPXueqdsNoSxenI8OI74o6GHHg-fRPEayUzi6nqhQYlwpsep~2sbngbwFfvvIDuC92GfjtXHesThdX9s2h41cMSTqHqUaHus-tZo1qyOPamdC6yeh7t-vqyFB1eq3u-7Q6bZcL2pxKvPL12BlCmAadRPXFRTqO5hS8Hx5TezcTBF2DgYc0HGH8pOdt~yj8hOTz~hx2eWOQLA1pBZ31-r-sUtZgDF1mCCcUfsjXj8yVouV0Yq~-4~8YG~3RvdUKvpvCYO4NpD5hyeqS9z-~O25s20Li3XgIj-isaq6oo80lXCiaUuXvu99gslUx7vbR0IJsoLzOo~0LMbyLVCqSqTg__"

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Xenium Ranger 2.0.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Default nuclear expansion distance is 5 µm.
  • Enables reanalysis with multimodal cell segmentation algorithm.
  • Interrupted runs can be resumed.
Release Notes

Xenium Ranger 1.7.1 (Jan 23, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: 51c373964e46c041e08ba73888657edd
    curl -o xeniumranger-1.7.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.gz?Expires=1750090414&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=VlJ00xYE7vhx~BfWYYOA4h-evqmgli5OotWyUFy926YloiAsYOZSZqu6TKpWnhHUayM45csaQx-wKWPbnKfwv0yqkwapgCEhOhX17u40x31V2RwsKC9wmOt1XmB1~EoV2EM0ujfW4Zy5elIAqjJojLOamQHdBUN18Bn3AplDFXUbrAvFQVUbqJTKxesIPiMcLKe7KGWKkc8zWRv3Num5iB7vh5u5SClNa9a0ZcyJEUAOdAWCM8danfm6pJxPbg89kObyv75QGNvOTKEwzZYJNnp5o7IYVvTw6Y8IFcs6vGV5Ad00zlpWYBc-4yLt5xSvyrtUt1~s8VnakNat8pD-Zw__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 43e6e4433303aae30973682dc5219f20
    curl -o xeniumranger-1.7.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.xz?Expires=1750090414&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=hT9dTl6Za9P5ipjAuqFIZiFwEhQlafbzsey5qlIQ4TRxAj20Sgc9HEWJAfqm02VBLcR6R7f4NYN6gIvINBL57pmCCNh7HH9PMxAVA0GPMyumx61LZx~IvzVrSD1OAvBgjD4xctQFDOJwlYiIGm0C5L8FQAB67dR-gM1UBq8P8hOA3RQiaD3~w9bgnMpnjXddZNB98nxiOK6Ok7PrJb1srqMaINRrOaS2MujfiGHLWf3P4rYUyJ0LLbcOQNazESthuFyAednljpldxdx9Wbcy8WYE5w2c5JXujbOI8SsxZnJnu8ICXhUsuX3VFzfYHO~XvipU4DWVkXDEj5-dsdWKTQ__"

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Xenium Ranger 1.7.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to latest version.
  • Image-based import-segmentation now compatible with segmentation masks.
  • Improved memory usage in the import-segmentation pipeline.
Release Notes

Xenium Ranger 1.6.0 (Aug 17, 2023)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: ebd970ceafc057668b9e664df310a5fb
    curl -o xeniumranger-1.6.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.gz?Expires=1750090414&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=P68NIBXYaLElC6rHuxLkgTKBCvg9qQCOgV07nTlz4cpp~H0QAEOJqt1-FA3U4P-yChpP-oO1DdbewPEXz6aPWIEgeui8OZ2u92j5P~49UfqF9WizN073Qeh-7B6FmGxGgatUALwbtVr6B37Q07elsxrRB6HZwMubLjdvNhLLsu2Ni5Ot59bmwB9eJaA-Z1As5oNlAAeDKYvwLZd-KFUnMUfxxztHNzVPajO39W1yagZLzSemtdp8~4Rn8GX-fPl8x19YgHAG9eOQsq4FY990crXStnF95N6pM9FUY5Lxd41czxXX3k2rtZkepEdAsumL5fGkRd7McByYbzdntammlQ__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 6fa799cfeef91264fdc174ad43b6da3f
    curl -o xeniumranger-1.6.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.xz?Expires=1750090414&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Ze-HzZaHxbgM9qxfQJ8k-SAEzIQSuLx9cmJCP~WS2Ja22K3ZoRR0pWMXOi6pTUwCPON5UGfN7NASzSrls3pJ0rKnHvryAoPsaaGrpfiF8SOw~9bzojSr9qKNAP8CgZT9l6sHsjP3hi4YoIAg~EcpMuP7mpZGYcR-GeUcxxM4Aijurx7EhRTp-nEAo5kIVolkHHHmGr2k~SWrexbtOElqeWy48WVnOtzFwIfm5AC1IKwD85~SrZIokW9gez-OBgGv~E5nMTSDdLxfj-IBgZTYx4IlPT0BIzj3gvKTxFG4NiCcFX~Gbf745F0S2UwSU-kHjXJCELSI4EBbAIEePziH2Q__"

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Xenium Ranger 1.6.0 highlights

  • Initial release of Xenium Ranger!
  • Resegment Xenium data with customizable nucleus expansion distance and the latest 10x cell segmentation algorithm.
  • Import community-developed nucleus and cell segmentations in multiple popular formats (i.e., Baysor).
  • Selected the wrong gene panel when you started the Xenium Analyzer run? Simply fix the mistake by using relabel.
  • All pipelines produce the same output bundle as Xenium Onboard Analysis v1.6, so they are compatible with the same downstream visualization and analysis softwares (e.g., Xenium Explorer).
  • Backwards compatible with all previous Xenium Onboard Analysis versions.
Release Notes