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Previous Versions

Xenium Ranger 3.0.0 (Sep 4, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.9 GB
    md5sum: 10e28b33f0236a5e62d615dcd921a9b1
    curl -o xeniumranger-3.0.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.gz?Expires=1765659268&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=iZ2XJdSs-I6uGEhvYtQu1LE3X~~aEN4Bjh2kt0s30i6BP8DCReZ6Dc1neGRXbQKKMAsfYlLgPIDbUZmAwc~lOY2o5CAUYowxn0j6YPCpZPefKsXGktzS7eKMUFnfC0exiK-GaTFZspuw2ZI6FDbe~Y1Vw-fCfcbq4N13lNEGNtEFHfWvYv4c3zfC7abDpGxoSLTcSWOGUyDKaFSKLmfi8nkls14lW4qIGf4YyXz7NT-oXba-qUawRi8MQtp5RDmfHqFLoMOKVgarOFrcTcxubo-NGY8V1GbSMxFVrPnevJaZVg4IECEFAr1koxorHOSlVmCFo5d7i4JjgGul8GIyUA__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.7 GB
    md5sum: c31be85a7e19edb8da484c295f3586cf
    curl -o xeniumranger-3.0.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.xz?Expires=1765659268&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=mQgbzPJ5heB7nQzEVTyCKzzXFl5sgfdh-C6EbsZuqP0G2N7xgQhSYAIxtSAGXSman1bSHfd6iG4dGtiQyIdia3Z6DStGjrlIJx9YhObzGAbh4mflDOWn8jCUqcyEs0XcnIhA9oEBZdpxXuLeB-muwi0XqNHdHZaXz1fVjM-ll7PnsNOEDVF9uQFxH~ixAsZzDtEVSMgKT8X2kdCm36MifUdEMdeVl8Tx-IUOJ8hosfO4Tq7gI6eSFnnAE-IQwIfZO7FCtm4pOfKLsI2a0DwK5awJkmOsy7QJeWJkIsr8cxpl3GtIBHsF5oPBraa596rJSrvte68GzfgonLRiWvb2Iw__"

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Xenium Ranger 3.0.0 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Reanalyzed data gets updated scaled transcript view in Xenium Explorer and analysis summary features introduced in XOA v3.0.
  • New rename subcommand for editing the region and cassette names.
  • Robust to corner cases of importing transcript-assignment data with empty cells.
  • And more - see full release notes.
Release Notes

Xenium Ranger 2.0.1 (Jun 10, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.7 GB
    md5sum: 45d207dc432226dc003a31a287f5ec08
    curl -o xeniumranger-2.0.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.gz?Expires=1765659268&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=U3cgfd6ZxqNvuLFnncr5fOgMxdOSI6xwq1Kgi9Ze4RpujuY9j2HT0lH5QJslNYsHXPgOseFfbCWdNVUYOlpN~e5CX02uvfqKXFrgj9LO8T16KczEmHoHrrTiGBVQ5yo9Tqc4oTMt7GgHVkuo9ojoTMbqxAfog3tjpySyfc6ULW3m9Bzuyy7qrHM1ksLRT0FrxgyAFfBHZrvf4JE978GsYkN6Fo8vdEXTb11eaK7OiIyKaY3BqNiu3WVjHKQB9cnTp0wR3bkABvtnp9CqDoQD8Q8RKDBrkYsRgRgEY30JPYj-wNMtQoJc7pahh7nZJFtAFFgjheGcvE1l69-H11cWHg__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.6 GB
    md5sum: 244bdbb3d159ff557a7747c03ec487a7
    curl -o xeniumranger-2.0.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.xz?Expires=1765659268&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=jYxsRjJkC2dwyMCKd9xAI4-3PT~KSZvVZ-7odZUSamUcQz8YfzhKbVkqxDfJyihW2hmHX8u4GrwfZKrkRsjyNBxom103Zy61h2RnYcMqy2WHZ4R5HUcbaTDchciDqSkW8PqTjKRCxeAJUnWvKMsXwtIf5-5V38kt9b~JHH-9v1BT8aXqFT1RKnBokFQNqiReeSScrJl8oJd5LsQkN5CMRS6DOuH1Hs1QW5IRJwJUQM79NWNpZtNl6m5qSyfpnhtQMDlB4esULJED5-SXnPFe8lXr-HxH0kGGR9j~JFknLjVi-~-srfakVQV7qUiKxfpvte~QuyADEmK41y-ZjjAnNw__"

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Xenium Ranger 2.0.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Default nuclear expansion distance is 5 µm.
  • Enables reanalysis with multimodal cell segmentation algorithm.
  • Interrupted runs can be resumed.
Release Notes

Xenium Ranger 1.7.1 (Jan 23, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: 51c373964e46c041e08ba73888657edd
    curl -o xeniumranger-1.7.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.gz?Expires=1765659268&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=nJMV2-1LQV1RC~2bptvFkCAshdPsRUxmbQu6EN1W~IVIfz-E1S-fh5MmfRfGmPJPBPw7hedQvDFthEBWjiUZsuYP~Gk5pgLZxga7rle6tDMywOchvIRy3Wr0Dz6UfOYWK-v7ZSlMda26crzqAXeB3CPxX20uB6h-4Bi0q-dmKTI37YyQ3hDduzxJRyRkzjCBFZlyq8~auP73F~ISlCa2kL3RUn0hc~B0hREJuV9ryB6ojmyaEUWAgAaD3SEUiH0BuegPSk76maGj4aRujptaTWEod-VHKehwg2~wqbE4gj-0hfrhfzH74cdD9ud7bpZFHj6jnvVHn7RPOYrNGjjTnQ__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 43e6e4433303aae30973682dc5219f20
    curl -o xeniumranger-1.7.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.xz?Expires=1765659268&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=c8D4H30qj3ll6CIob8atMrF4mObw3Mn125Tn3Fxou8OiEVYSCn4vp8XXRWr~aqe-0gfsZpYdyeHqSW3uALeargOXlUdMNEYzNx6rcJtwEtXhF~8AprQ4SVFxElIHLdg05yesAFNEaZR9YTxFTN4jyfYHNi2qjZgZeqi2N7nxDEgrg6T8ptC6GwOi89mSF-M22eWDNBu1qiVBszX2XTZSP5tQKpTUHox6RboDlfxTlhf1uRUXaBRChR2cY0OqfHw4EhCwZJ6c-39lHDyOrYBf9csI8UWkTjme0K8DFP0iOSZ9ItAZFkuChhSwWbRHGirFGZkUhpJZTn7c1IdjMnOoqw__"

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Xenium Ranger 1.7.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to latest version.
  • Image-based import-segmentation now compatible with segmentation masks.
  • Improved memory usage in the import-segmentation pipeline.
Release Notes

Xenium Ranger 1.6.0 (Aug 17, 2023)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: ebd970ceafc057668b9e664df310a5fb
    curl -o xeniumranger-1.6.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.gz?Expires=1765659268&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=OOQFRtoBcdZ87O7LixF6AeEe5IX0KsapHXK5BTn4YQgV60uOM6QKTXD0zliY~wmhGlE~hZ8FRpYay5USdMDUD1I78hbAfHR3SQkOYujwcvMtgI8EVxIEk1X1XE2MOYYNQI~DhMv3oTNvaTSem3ffZa9MnnyUH6rOyn9mWiVzCyJWsGe7F7ovSP3CNfkPj7PzWyKP2GhokV2MTihhByvo2JUQ6ZM10p~NF47vAyxXQoBrRviO4MqWnEfiFLlx1MsSJkyedDP1cQKT~XMtkekQps1y-qvPnzetOGcXfzysx5I6zjDazasGRFohue7IszV7DiT7gw4vE7FavII~vAHBJQ__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 6fa799cfeef91264fdc174ad43b6da3f
    curl -o xeniumranger-1.6.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.xz?Expires=1765659268&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Kb9QcHB2rcX4O11wZL~Zcv5UveqQO9Z7Qh0JXEWjHlWGhZuxyw3D3OJQaN53HuGZ7IohibPWnmzbH6PQicjeh0IdAdb03rADT9cWwXlPvF2JHciPdlhIJEgmW0~jNV055Kn1F04vvJsVOknc3QAAvShD45gsyuaDD9FLoohZVXKGEkvvn61810Q2xan2-B1uohQWlWZOoJQD0Q~lDNuo3h0Cknqgg1T~vlpGFtvUCkki0Eh1mVzIYk8-zWirjuhHOcEcg0V7zbdVJuXd0SITMLmiClAqOuHNaK0gFzbbnAiEYusWNG621OmrwqAS2geRQ1xfBEt21DPLq74ILRGqBg__"

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Xenium Ranger 1.6.0 highlights

  • Initial release of Xenium Ranger!
  • Resegment Xenium data with customizable nucleus expansion distance and the latest 10x cell segmentation algorithm.
  • Import community-developed nucleus and cell segmentations in multiple popular formats (i.e., Baysor).
  • Selected the wrong gene panel when you started the Xenium Analyzer run? Simply fix the mistake by using relabel.
  • All pipelines produce the same output bundle as Xenium Onboard Analysis v1.6, so they are compatible with the same downstream visualization and analysis softwares (e.g., Xenium Explorer).
  • Backwards compatible with all previous Xenium Onboard Analysis versions.
Release Notes