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Previous Versions

Xenium Ranger 3.0.0 (Sep 4, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.9 GB
    md5sum: 10e28b33f0236a5e62d615dcd921a9b1
    curl -o xeniumranger-3.0.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.gz?Expires=1765667667&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=VbVow3NJ8Wa6AEpeeQDt4raFdsmNBvt18BqFzcqBZ729Pyp52s~AdsVLQ5zQYC0aqykVdgTEx1dEygWeWFM9rIYzARgu6ToHA0i4cOk26DGUqwT-79nIU6x8rxxyRIvD2aaqcQWwC7Jv1pinLU4p7f5fj9JJE7lAs25OxJ~syKTDQud1gbpqVuBL0yc9clp4dA4BUox~kDoFGxJt1MUqytf-EqsJhLyFpF1uAY172tgmsOnT2L8Vid~Xj5cyspVfAUopKQ-W0nCnmsAQtlylZCIGTrbB0~RLZFXaZBMUzb-YmifYALuSHVi-7QyBgNcfpN4b3vgdaNSCbPqbRmePyw__"

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    Download for Linux 64-bit (tar.xz)
    File size: 1.7 GB
    md5sum: c31be85a7e19edb8da484c295f3586cf
    curl -o xeniumranger-3.0.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.xz?Expires=1765667667&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=NG4ID5kgZBE3Nt3JfqEdFB8kxuzw5Q9jANrqn7M72BY9nRG5YPJKahGQZBzBvMi-hA8nXA4phjfNlIRBPwH8yeZUxNtNCjNn7~SRRO2z0V3p2DuAszosRvYwkmZ0Zodye9fYyue6WnMU-2JlCZ~JcvODmaBkKzGl2lnfXQiVleYs4RKvNMrdVbpyMtKP4A5iQhRkHjk17CRXd4JAlgBMuJmjLhTq4s8hbO8LgFfSot-pzvHnqysJfWBxEiEoDv94BeRB9iQxCEExu7WaIhhw5~khvLqDRx~8u79HDCKD-WQ3z5uOQL025-JvjDEhGZgHQqVmzQLAIrSG3oFSo9uDwg__"

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Xenium Ranger 3.0.0 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Reanalyzed data gets updated scaled transcript view in Xenium Explorer and analysis summary features introduced in XOA v3.0.
  • New rename subcommand for editing the region and cassette names.
  • Robust to corner cases of importing transcript-assignment data with empty cells.
  • And more - see full release notes.
Release Notes

Xenium Ranger 2.0.1 (Jun 10, 2024)

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    Download for Linux 64-bit (tar.gz)
    File size: 2.7 GB
    md5sum: 45d207dc432226dc003a31a287f5ec08
    curl -o xeniumranger-2.0.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.gz?Expires=1765667667&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=aTx4Jm75O-FDkX2x4PJQuudVyvshmiZxKKP~YbnSzwDUOZ5~Ywz8wt~OlMXCeD91nFO04A6zwUqkbinjdzg1ZU3bDZyC2j1uBB7CZVi~aotwcJ9zqExbJnF89I6ex4CqanWnRS41mxult1I9~lgHBdL-WiKlWJ0A~7GkiQ6oCOnpadalGvd2DSgykBU1LhoAKWQ45Bw0ZaSTBs8w~oggxiBmG9oxYopFD5VuADkfNsuPEElcDAIpyWpFxvJI16AtKGJn6Yn1t4CrOit~PFSfGV4HHRRodUrR46~FxmasKQ9JazQJRuG2MFUR7uKx8zYSFxwbOs0ktcnHZ5yesNVo5A__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.6 GB
    md5sum: 244bdbb3d159ff557a7747c03ec487a7
    curl -o xeniumranger-2.0.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.xz?Expires=1765667667&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=hidNdZscyr~beirOkAspBPq379dJ9nInhfD77ctkCDO9ek71enJRYoARkhyHzatJ~E00p6wa0guiKMi1WqDFoN1FA8HhPYLtZoOE9ps3bT715meKnrSr2HTdD0OgaZi40UrcNutz-~m8mFk2YBwFwXMuDFV2wbgZh4kkf6jhywY9QGGyZ1Vazd8EKZ3B4-QFAyuWIhNrBq1-Ds3Sa4PX6WJp-3m1tsU21tZifu9VCAEwxxmkbcfS-Y2mLDSQUIj-ylttR7TVCCKB9GRYOvJboy~cuYPlkcivmaOfABdUvlcn3TOlTuPqYJhwPyBqGQQsqjRrtAmZKTMJorLE~yxy~A__"

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Xenium Ranger 2.0.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Default nuclear expansion distance is 5 µm.
  • Enables reanalysis with multimodal cell segmentation algorithm.
  • Interrupted runs can be resumed.
Release Notes

Xenium Ranger 1.7.1 (Jan 23, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: 51c373964e46c041e08ba73888657edd
    curl -o xeniumranger-1.7.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.gz?Expires=1765667667&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=CwXrZuaEgPsw937lEd4o7kK7G17n2G97yQpQTBfdTXzmMu8s5rNcARZdSy7Ksh9MIuZ5cJ8YuFz42Q8wmwgEyUnHn5-uulwlkJfHYW9knU-PGrwkztndoUgO3esqP42whBuj8VzrXogWMl-IsNUPyytNtLfdV9KiwTXupPS95qgcECT51qlcJgXHzR32HpMmagJwb4Z7i0X5W~C9wIgNljuAdycvz5VFvpgIIanoXWtIOIlfJMq7Rud~Anr8ziB1D7Os0ryhpEoFhmOV3Hps3njOnLSWN~gN~zi3tnjq~23kdljGMYkOmLz-3OzanN-6GZgrIX3IFCKiUSEErrcFHQ__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 43e6e4433303aae30973682dc5219f20
    curl -o xeniumranger-1.7.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.xz?Expires=1765667667&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=ef3TF5LWOwhOnJlpNQ8y8~LPu8z4uDn-t~OQsLZqKdHdFPbW3HQAbhnRN73FBkX3LPaHHbmdA953~zNnbKFVylmqCGIGk0H92EVVqxhx-m0gDYwkejt67RYe46ssLvO6ZBIRTZ4rjgIy2w9E6mFnkq2vkKqZDivHMyESX6qO-uvpJ6sIx46awHUGN4CIx0IZ5I0H06iG3Pt6oF8wgEQT3ZsPX7cNcLRDx8jWwI5xZ4AI-ow1EUnXk1y56wM0tZKlEEvd4gFYTopP6Rk0MI31h-TSe6FSfbdsgRY-8jBYwHOmHv7PiCN6m5IRIYcP08l1Gj6AS8-pH3fcTzGWMjRBjA__"

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Xenium Ranger 1.7.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to latest version.
  • Image-based import-segmentation now compatible with segmentation masks.
  • Improved memory usage in the import-segmentation pipeline.
Release Notes

Xenium Ranger 1.6.0 (Aug 17, 2023)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: ebd970ceafc057668b9e664df310a5fb
    curl -o xeniumranger-1.6.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.gz?Expires=1765667667&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=VYWD5eBxPTw6wXU6NgaH2tLJmuy7H~FNxE5oXm6ubTb5b0FGqqfdgIqTKtKlFoTKe4YqHzvnWkUJFLRtqGCSk0r4JZbgy67lVT19TliXZlhN2pN4LpPnKpempvpK~RO5Omr7Wq6UcwjCucQbYv0cZB~2V1HcdeWK2VYo5lvplDDdJw8dKFp8QULfRbn6AH4gJpJZBPYOXGcICvVBS9sFgwOctWLuyV0YlzzP3N0YkaPMd76-jF5rZTDqe3oBU~M1mVgReEffmhrW5sRGalc6FcGFDWPokcKQXceZXODf2L2zrHRa7xZ42h0gfoivBcoPlJUAQae1fcRrT~oQxh0oSw__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 6fa799cfeef91264fdc174ad43b6da3f
    curl -o xeniumranger-1.6.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.xz?Expires=1765667667&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=gD1mQik2z3d~Q5-mtnn9kRjjFqJMqBgX8l6Zy3Z2JsOazUIClnCuLhRrQ2FVu7uKaaXdgHgFsmmv9fibe6rfWU27C2MX8mV1Rmz4HgmGtgOBhCoa-nq4fZ7vCRUsFpRNJfTWOFEhB4v0k1W29gYAAE~kS~ypn7QKLuaIlNfQYkVyMdEQUwbOCIGaxP4XjCRZulPTZeby7j7n1wapIu-LNe8ZTk4vRYk45Te7A-W0d7YDmX0ueESed--euvJGqCjcSHnslFJ01lTQBiXq5K2hiHKPeuKDAti0cnAcAu6-CXGkOgQOXYa-nxeyDLbjQN9X6XDhdszH40kHfIMD~okvRA__"

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Xenium Ranger 1.6.0 highlights

  • Initial release of Xenium Ranger!
  • Resegment Xenium data with customizable nucleus expansion distance and the latest 10x cell segmentation algorithm.
  • Import community-developed nucleus and cell segmentations in multiple popular formats (i.e., Baysor).
  • Selected the wrong gene panel when you started the Xenium Analyzer run? Simply fix the mistake by using relabel.
  • All pipelines produce the same output bundle as Xenium Onboard Analysis v1.6, so they are compatible with the same downstream visualization and analysis softwares (e.g., Xenium Explorer).
  • Backwards compatible with all previous Xenium Onboard Analysis versions.
Release Notes