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Previous Versions

Xenium Ranger 3.0.0 (Sep 4, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.9 GB
    md5sum: 10e28b33f0236a5e62d615dcd921a9b1
    curl -o xeniumranger-3.0.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.gz?Expires=1732331421&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=OA5pDzowjXAthLF9B2Hq~eiF5SBQj4quqZi~TZwYSP0tc-JT1fPa2vHoFnv0iWLejxPXrdy1cUGSCKhgVwFWCjsmaVkpqGQqPtN8L0iiLQvox8lzOQP23aVVZqOa~tgJ1LHHvLjT2kssgXM89oPhk836Kl3Ys2Lq0RtIHrIo4M6XDelr2ix1ESf8CprFiPcDc77tTM1IvrCJGNuSvXjLH3wHqQXkTYQ22JXdggd6fCyVP2yBmZ0LTA51S00WFI-2Ro5iowTaUL-vdn1if97jULOAgDmqQNGgraXc-mXk6KFXXC0xPM-mvvRaaM5nRBxDIqAnsVKLovA6pLohYxLnvw__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.7 GB
    md5sum: c31be85a7e19edb8da484c295f3586cf
    curl -o xeniumranger-3.0.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.xz?Expires=1732331421&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Ff8Rd4VTrqRnDWE2N5dHm6ZfNCnYzKd-7olm-32R5QsPsFkgeLR1e4k9CAMFlMvopk54y9E043GEGbkxXCezDZsZ3nj-fP79v3HfxBsKq0NJS2Tv7Py78W9~2ADLflabcsOC5PlpGaybfPERY2TFZ2M1BG5ItQFeDAbxBXVUitGMz6iKUAWi4ONI1L-mhEx7MAhZdQCdWHCix2-70eCmtsxht6BGHVwf4HI7TWBcrENZ~vk~XspaSzATveokU-YMk1MWMcz7vxR9GR7yXw9OLoAfjajGxBBsuUF4xSfq5~iXz3v9VBXfAzm5Gn7p8THJsc8841-EzK-1vlD4js9cIQ__"

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Xenium Ranger 3.0.0 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Reanalyzed data gets updated scaled transcript view in Xenium Explorer and analysis summary features introduced in XOA v3.0.
  • New rename subcommand for editing the region and cassette names.
  • Robust to corner cases of importing transcript-assignment data with empty cells.
  • And more - see full release notes.
Release Notes

Xenium Ranger 2.0.1 (Jun 10, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.7 GB
    md5sum: 45d207dc432226dc003a31a287f5ec08
    curl -o xeniumranger-2.0.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.gz?Expires=1732331421&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=EQ2FVlZh-MtKusVaFBsETm2tq6kbFYBBVCpY0DqcROVO-Tv1xT-cZ0BuEP9u3iUTE5awLH96xYE~vYN95UJpXb6V6r9LvFFJ-qAY6Q-QWC7Rm5ORvUILz6XnClvpfZNrmwHOpkS~6UM6J~JQInJP9QjUSf0kRd60urGeuFashOx--zpkRURJH~r7sozb-dvFPgE-VN-zVjn29JPBDnc~Sg0nnCsQH5ET4wR5DMVFYym3U51vi-ojqSSQCYzWrxui2f8zAjRFv09cICVRHiDiHxTagFJdJncS5g0VIb2YKIJwmBV~2XnHs0sdYUV-mgCCvwAKdnkHSHb4EiRHz7JYZw__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.6 GB
    md5sum: 244bdbb3d159ff557a7747c03ec487a7
    curl -o xeniumranger-2.0.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.xz?Expires=1732331421&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Gott6qoGw0MA9JQbJyr-w6cIyt96aZ2DCz671kB1la8058d7tQLXRhvgX06PksMUuEmJqG~Sc3VLrtXg2DSojFawvzupLf7X1hSxgXThvn3MOfWeOv2sDxkIklgXCBPJPA8N8weXWXI2we9f~1kJJgnMCOAa6X4SjINTys0ZAy08JZ7p3CulnRkyOcBU2M4F5ehsEkxCXXztOnAJxU4RAfosrY~rk-ipbVjRaHESWs1S9-Zpz1C05pMzrl-1Sm3WGyqXsSR5Icbs0sdnTVgULfG-qak44hWS7KBdniturIXKyutLTKsacqGLkC7f6Kz79s3pGnGC3aoM3oVXe405~A__"

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Xenium Ranger 2.0.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Default nuclear expansion distance is 5 µm.
  • Enables reanalysis with multimodal cell segmentation algorithm.
  • Interrupted runs can be resumed.
Release Notes

Xenium Ranger 1.7.1 (Jan 23, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: 51c373964e46c041e08ba73888657edd
    curl -o xeniumranger-1.7.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.gz?Expires=1732331421&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Kxcc9bOP9NMxWKlwWdtA8JUjv2yXwbibrwsoG9z5pvdQkIS67o-E~R-GI1MnIN5WeSwbBENx~EGd2CPenu7Vz5z7SIkfCzHVUyCZrGtOqL6-rLA2khRboU1XQCWdV4A9erkBsWm2NO03HBzpKKdm274XdFjPqEPCzmBNq264WRP0147GwolNV7bcCj13dSQrrP0Xqs7fCFOq6~8VvBwm8UhVlTNhgit3892dQpSvh-PqSeROU-Zk1VRByGoKSF9Y2VQ9b4b7YJWuBGpkFaHUUcThtRQn7cRWYeLSwJOkt4A5FZGS0CA2QKICjwxtQbRsuFG20so4KzH9dcAwMDhyPA__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 43e6e4433303aae30973682dc5219f20
    curl -o xeniumranger-1.7.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.xz?Expires=1732331421&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=DSIdUvXL2h40PQqEz-AhaR5~MK6IvXRSGoXgYg66a2Nwfeqo-M6E0lKh5e7js2wWgrr1YL1t0xA7lTXzfH4vGMWkhdc~Qi7fML7henpgEiaotKOsd2lsNbFKYSejg0oRzlloPkD3UK-N-FudZFoZNCByJCUntQnxtOLAiRoZKfRTYPaK0XySlcFGX5BJMcOwWJOpw~AtxH2OrMHPsrX1CNhg3yip6nuiWhZpyfXa0FqoK6rNC5Pkr0USWHno6aCrlVj4m4ghTLKMfYDMVm7XtJ1ywALe17XjXBHE~XW5F6OtmZdwVUfpUZACWyetLW-HrVZdhqyakapg87c-nIGgJQ__"

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Xenium Ranger 1.7.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to latest version.
  • Image-based import-segmentation now compatible with segmentation masks.
  • Improved memory usage in the import-segmentation pipeline.
Release Notes

Xenium Ranger 1.6.0 (Aug 17, 2023)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: ebd970ceafc057668b9e664df310a5fb
    curl -o xeniumranger-1.6.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.gz?Expires=1732331421&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=eh6rVB~JwCsc4VzaykfCYfsWYSJZ~1JJnXyRyGkZgTaoq2cRMbMqWBBZDOaRdLYBiyTKuxCpTgqeMjyhSqqMvu2PODi3NobZjV1DISTcpzayin89Ah9DtY~xLMLFZPM4eirsq093hcayBfcbv8OuMtP6o6daOdQdM9XEV5qSElblz0QIzVLCBKdE58Z1oZTsdPm4yyQVbn7vP8J6f8ZRisfzvc08FqHtZCLcZjJFsrNrRuHDlLpSQQFM1j9t8-kGV1LJGjqQiNIkq8MWYM74tCFSottIP3AHkpTLf0w5OEqVgU-MSp~QM~hFhouPTjUVhu1RTQmRl9zVhNIATZNVKw__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 6fa799cfeef91264fdc174ad43b6da3f
    curl -o xeniumranger-1.6.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.xz?Expires=1732331421&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=BF2xP2SVU6F9hTzTyjkzpKH6z70L6OFcykW1SXAhIq1U0ZjbLXTd3JgRZLMF2g3HuuH~5DzRY5xMvZQCT5d0MpyMZDS-Qg9lzbya6nMFpUYGPplPr41t~59-oCX6iC7kVt-NQolbXyycsoTCG~xF3H3tMAmJpZ~e9fCrmikrGSlh3INFK9mF-VDl3qzC~yBBqC3WUhfjBbp39nlHtt9olqnZCWAALv-q98TE5yEmM19v2HLcNmmDa7YI7~iqX1yplyzGSDTTfWMoGN-8ymFPcL9muahbzCg8b5ymNkLiU4l6qrwzBWNIDdS~Vso~zoN0fORzza2VuL7kfJvgcRwauw__"

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Xenium Ranger 1.6.0 highlights

  • Initial release of Xenium Ranger!
  • Resegment Xenium data with customizable nucleus expansion distance and the latest 10x cell segmentation algorithm.
  • Import community-developed nucleus and cell segmentations in multiple popular formats (i.e., Baysor).
  • Selected the wrong gene panel when you started the Xenium Analyzer run? Simply fix the mistake by using relabel.
  • All pipelines produce the same output bundle as Xenium Onboard Analysis v1.6, so they are compatible with the same downstream visualization and analysis softwares (e.g., Xenium Explorer).
  • Backwards compatible with all previous Xenium Onboard Analysis versions.
Release Notes