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Previous Versions

Xenium Ranger 3.0.0 (Sep 4, 2024)

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    Download for Linux 64-bit (tar.gz)
    File size: 2.9 GB
    md5sum: 10e28b33f0236a5e62d615dcd921a9b1
    curl -o xeniumranger-3.0.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.gz?Expires=1743823052&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=FMa3jJrmSTl-ZBQeGY6fHKVjoyuWFYupLir74TN5zxI-8WTHlBN5h5jDU02dM6ZwoKqdDl3a96v-5dY2F1tOMTtEGDmc1-nT6Tw1ldfYFm1aWGjnto4-V-AZ2NF~7078-wn5gxpBPGlmWjtnOXXwNviGld8oKvt7s3Sg9vLuz7rBlTFQqiCGF3rqw5TMSLoS0pDwyJ4yn6yDutz7psdlNOfxSr11BVUfHTtsLIX6EW~ufKDYrFVu5IheN8~uGMqiU8JngGwJKs5zmnocdu9cDBTSgIvIlLv~ZLPlMLtJU-Bl2P0nmZZBfHINmw~DEeLvuWzxK4hf9DffTy1PkmiFeQ__"

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    Download for Linux 64-bit (tar.xz)
    File size: 1.7 GB
    md5sum: c31be85a7e19edb8da484c295f3586cf
    curl -o xeniumranger-3.0.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.xz?Expires=1743823052&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Lp~HaXgOu3fpyV1589z7xH-Ey~h6~NLUtXPfrwFfko8WSbzbTWsDyRgJCdp2dguGD-up~dHLyRs0bC9eZGRrk8NlzrKQrnAyzGj3fJ~gQbJ68NQBw5AuWLQamjLiH9tC7UDSyTqOJHukPGCJT7v1wkPV3AL~3FFoyROKgGxBgRReOhsD~HRAFfjr9cIR6jVlZ62P8isthWUS5OdEzpCFtr6ud7omsC5TpVDDC-jTHhweRRB-8X1IAiEK4qh4h-u1qs-3TqKyxzcqYfmMLE83LE2y8E2D35t~PXhSD9iB3LRGCbw0yArG1-qpesyi5UX-sbeqCLSyTesA2imDJ9j~-g__"

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Xenium Ranger 3.0.0 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Reanalyzed data gets updated scaled transcript view in Xenium Explorer and analysis summary features introduced in XOA v3.0.
  • New rename subcommand for editing the region and cassette names.
  • Robust to corner cases of importing transcript-assignment data with empty cells.
  • And more - see full release notes.
Release Notes

Xenium Ranger 2.0.1 (Jun 10, 2024)

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    Download for Linux 64-bit (tar.gz)
    File size: 2.7 GB
    md5sum: 45d207dc432226dc003a31a287f5ec08
    curl -o xeniumranger-2.0.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.gz?Expires=1743823052&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=N~ZdL3mgqSx6FMG8-zwOnJg9qZVZwvYnvSAmq43cNO-bZtqXoJMwNQ-vNtmApmdeOBEhq1boaykY6TJuTkL9BmVet2GVBKVQ6gBBg0XHM~DAbSjzmlYY6mKgY7ebbe3pSFKvQrFK1W4ZRukr8rH7SoySv0m4ZFUX7jZrktSuwi1-CtjWB5kF3nNnVTjXuwbUQphyikoJSY3x7t-nGTcK6jhtJWw28czDwIY~DabW02SBt-1ziLJiXkuNGtmDqRNofvg87NlBQkYpnZwBBKcroWjHYqcqKhUGR~y1IwrH1VSCba~h07uhCmgfMFNN8y8AsN0tsbe884VXssITW7k14w__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.6 GB
    md5sum: 244bdbb3d159ff557a7747c03ec487a7
    curl -o xeniumranger-2.0.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.xz?Expires=1743823052&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=c-RM5KiJ~7Qzum0meDF70krWk2XB-9MjDLH3E1~cmoLW~QSwZoCSsnK3DRw~KUKCGPThPtuzi-1jP5tgs6WAtEVjHBvpNkmHAfXs8uxX~HWR3A1o9QYjQ4M3jCeBjjJ6UQq0T6ifbB7ZJGNLKXJ1vbmITyTV610DdjHGCin5ulRVgZBFZlm4uFIn3yQVRsPvD2cXniVPVqVF0~Eho61CtsoMufVswZ24af3zYhQHScJmJ17jDTkQZRBGtE8zFFG7owhl-fnoV8tahm3Kyuc~22QQ3sQ~YJaxeufXGp0i5~ngWMLI2N~9wHvUHRcjiR-MxTXZFYZnyhWQKIFXrKUY8g__"

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Xenium Ranger 2.0.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Default nuclear expansion distance is 5 µm.
  • Enables reanalysis with multimodal cell segmentation algorithm.
  • Interrupted runs can be resumed.
Release Notes

Xenium Ranger 1.7.1 (Jan 23, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: 51c373964e46c041e08ba73888657edd
    curl -o xeniumranger-1.7.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.gz?Expires=1743823052&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=VqoTEuGUMlXZcX0TBBCar5BorFxH-JrOvRzOBjL2EPNUN9WaWJuyiw1Rly-L--8jbsXyHx-0bNuLuSSs~QeAKvfBPLgpyCRTYiQuN3sJ~thveKLo9SGJfLKM9wavJWfHk0DvXQIIdIobnQBHDJd~Aep4SnY0IKKIKkMf8ZlfreZ4ryfzILIbednPOZvXJ0K0YkMqJ5bgqqE~NdHR6lWDdAr1HcjP5T2eI8dszvm1LoqIaOole7pjQm0WwxLWNTdBUBG5ZKHs7Cnk0hroy0UNNSHVaPsF73UxoOV~Gp9qC7zPUugaiE7kJcK36FweWWIJnfoK7UyCvMLPfpuUxfREYw__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 43e6e4433303aae30973682dc5219f20
    curl -o xeniumranger-1.7.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.xz?Expires=1743823052&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=DmDZNP26XIFMl5NkVnOK9EQ2Erasnzf6nqoJ8R8MP73sMxzxdzu2ueMLN1JjF~0V-q7LmDt5QZqZdMhvsOn9CLcNSqkkPPjjjY0W3RZBXanaMxqvhAx~lOTDFLmoEKRz2TUGEh4y3KFFnP7u9aMP8lpCCtEIxLHITic2kzZAF4hOR7idelNJx9kkwrNKO~1lM80aLe~OsWU-eFrLCK7jyMJQpu5~E6tN0xEHuCWFPFrTmhxruM0Z2-iXwNYKCvX7FFkJ6yrXYblTWD6WQmgdjMKzhx0AieAtbIbZu9jptM2Uv63KA8tN7pvMmQHHBNchWJ0H-dJ9Dx-osDcuMMPvlA__"

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Xenium Ranger 1.7.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to latest version.
  • Image-based import-segmentation now compatible with segmentation masks.
  • Improved memory usage in the import-segmentation pipeline.
Release Notes

Xenium Ranger 1.6.0 (Aug 17, 2023)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: ebd970ceafc057668b9e664df310a5fb
    curl -o xeniumranger-1.6.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.gz?Expires=1743823052&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=bdOlorxTpXMc-R~1IkXRV4~kZTFDBB56~lXbkOoxLM3sVu~jy9vxsbhfPIDW1~HRoW3X1-41Z7Q~UWCEaihzT7frktqnAJry4a4VJC1L5dQbQynMVH372vMIn1XtxgwOTkhgra55gSajnpna1wy9S9ud5N74HNLRA5Yqel6gzAtFEXL11nN95IYNbUWjeKNOJzDqExwpupHR7MgeTdynat8o5v4xtAJTgJMQ~~l6DrhfsCRkJCNGOgNZXk3iOU6F~ZdYIbwysuweLzBumoupnh2RBp4mpXTIcPobFG2rLV6Zx7GNWLY0VNp10OGOE6BZFEkoD8p2FQDcoyP~aM5hGg__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 6fa799cfeef91264fdc174ad43b6da3f
    curl -o xeniumranger-1.6.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.xz?Expires=1743823052&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=eD8dU-Ps16gaN~yYLtUIIZFhzvCu6BSxHJayl88rmzQ6Sa3St1F5hP3MGwrzfqGls9OGdBOZj8S~WQgW0oHxtmSmJQ9gzMz08kSAv5mDq9Lvn6iwM89uh3Uoc93XRf6i-bJjj1molo64tcUsjG8JEyoTfOPffLS1i3kmku8kpXvv1OThhECecnLsthEK5xEcyf7x6~OFm0ko00SHOlHcMbeCLSmLaHOCUJH95xK6~WUW~lrbNYed0m0na30ItwsBtCa0mjAcNuCFVt5mMU8rDQ7Z2lSvmHHGrEt3q1UdkFZJ23Psy2U6XqtvfUna8EdWn8aWlcm-lAPY5~jsBbntdQ__"

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Xenium Ranger 1.6.0 highlights

  • Initial release of Xenium Ranger!
  • Resegment Xenium data with customizable nucleus expansion distance and the latest 10x cell segmentation algorithm.
  • Import community-developed nucleus and cell segmentations in multiple popular formats (i.e., Baysor).
  • Selected the wrong gene panel when you started the Xenium Analyzer run? Simply fix the mistake by using relabel.
  • All pipelines produce the same output bundle as Xenium Onboard Analysis v1.6, so they are compatible with the same downstream visualization and analysis softwares (e.g., Xenium Explorer).
  • Backwards compatible with all previous Xenium Onboard Analysis versions.
Release Notes