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Previous Versions

Xenium Ranger 3.0.0 (Sep 4, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.9 GB
    md5sum: 10e28b33f0236a5e62d615dcd921a9b1
    curl -o xeniumranger-3.0.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.gz?Expires=1740309742&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=YrDixE1bXnSMNgwk7JChUE8ByOHkOaqDQKCxdvQf5BogJUbk6WcscyDoDXOVCKq5lrHY8jzciaJK3ACn-tjPvOG-QBoKf2g2PwiH3DT85HVIRIe7sU-a8J-9UHVkTPKgZ1o8iJjwT6ZgOtW8I9phbsdkY-r3L3zOU5fjtJrVjwjIjTTsUyQlr7ZPCmrC6xVEDjCxG~8pgYqcEHUAlHqxQHjlChZeuN7JulqiDF0trGNZB6dy0TDSMT6nFxNVs~zulaEnws-tWE4PWFHuOW5X4LP6e84VX~qO4axDYwFLkB3UwRvFcv4YL1C6aXZxprGU2HpRUgDWA5Q12XGAT0XtFg__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.7 GB
    md5sum: c31be85a7e19edb8da484c295f3586cf
    curl -o xeniumranger-3.0.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.xz?Expires=1740309742&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=ZaILY4bl76GJEGwkptpjOF4Li~m14Q8lNc6KpHGT85ltmanq8gGZlhlfOL1Rh664KMcQEj3TvxWjMwtQJ4xT8XgLuPlEe4cnPvCXXx0Z~gGjgr-PtPOVV6CrjTbRFQW~~7N50Zvn7OC5p7g44~JKLFjYuTWhBdB~eP9R5i23-UzMkTWvTyW4pQAvH7mRKqYumHNhdWWntyiaJz4ONg0pEAl3uwPLGz1us85AvVH30fUGZGPEORMO7GQ5grBfbZJ~l8e2pDgBF3JpKiFGfr0QvhiY5HTA-~-DWUreNC8Tuw8Z7GYtP3GzOj1p1DIPoflTN33SAwnScIrEE~E73EPX8g__"

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Xenium Ranger 3.0.0 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Reanalyzed data gets updated scaled transcript view in Xenium Explorer and analysis summary features introduced in XOA v3.0.
  • New rename subcommand for editing the region and cassette names.
  • Robust to corner cases of importing transcript-assignment data with empty cells.
  • And more - see full release notes.
Release Notes

Xenium Ranger 2.0.1 (Jun 10, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.7 GB
    md5sum: 45d207dc432226dc003a31a287f5ec08
    curl -o xeniumranger-2.0.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.gz?Expires=1740309742&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=lJ24AQWtNX-G6sfRDI2w~9PH6BzCQSv1e0uWOE3k3b4YaV8ndNkHhwysDI3WEPKaqCSgc3mzvc8Rom9~zAEK0j7wWBwxehrrtLDx9Sq1QFJtRxcUeI3VOw0IeuVWxBiXvLDeLBr~NkY3WHvUGGwTe-1sBWmRagCmD4MDeM3fg02bxpLFQhtPVY9hAwil-Z9pE2CIij9-QIeQUOHB3GlYtGfeFlyDhWN9kmdHXgfRBvbkAml6GGokvEevih3NhKVlHQDI58HpFm0BRE9MfKOsZG65JKwBR5N3JQGJw0u6Gt3dabk52h8K8gLriRkAKzWiQCdqgro2OFwievImvHi1DA__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.6 GB
    md5sum: 244bdbb3d159ff557a7747c03ec487a7
    curl -o xeniumranger-2.0.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.xz?Expires=1740309742&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=ZeaoWdxn2NmmIEGyIEEDcDgpNDy7vzGgUZE-hsyzvhvMjXnnCFs7h1rkslo3BZ8JXieE5Q93XHxRoufQm7apj7xT-VQmw-6OsO6Z7TK5OdEFrsmUWbeM~CxtimwEKXwsr8m9aZ6xN~4W~EKFih0HMBQpMIK4U1sOS3UGlV9VpMN-gQCll2CT-GSuLFY1zOFoHXR-91c3jwdwo98R766ysRC6O-JpvbY6TU-zm8DlBBfwd96j-J1ooYf3Cb-tJAYXxQ0KgjJonCKeX7RKftf-dXCEXQwZCOBaaByi9OUYgdtaP7PIpdOZ~YXAZgOuoPQjT9zKQIdFjdj36kR0pInFvA__"

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Xenium Ranger 2.0.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Default nuclear expansion distance is 5 µm.
  • Enables reanalysis with multimodal cell segmentation algorithm.
  • Interrupted runs can be resumed.
Release Notes

Xenium Ranger 1.7.1 (Jan 23, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: 51c373964e46c041e08ba73888657edd
    curl -o xeniumranger-1.7.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.gz?Expires=1740309742&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=n9VwNJt-lg0VIa~rGS1WYpIaW8lg0jpmyGXckqJrs4yoNrOYTOItvsk9WQCbwUjTF254StoMbbu4F-UpCdYOuZkkdWbljP~R81BefdiaX7GkoRYAJDWmZCu5ZRq41IjOqAhqhtqbMbK63xQ6XEdoccBZ-1SOxwnXLFCWYcLoqLfrb7ZvQU3JQ0YN2Az8yQuzAt~NFagijBFj0mygRUNNTXkB4dFt4w8rD2jRNFn0FpSGp2ceG0JBjAGakL5bOYiSvJhS9mKNEbUEdtgxzkw64lz9orwdbic7rziY8DYMH0jtBWjzIb20JpImGKFAx3-kXPcWJIqrNl7CSf4X5pxGbQ__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 43e6e4433303aae30973682dc5219f20
    curl -o xeniumranger-1.7.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.xz?Expires=1740309742&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=MRotS6Iin~03iQaIfBt30TR1QTpQFsPIHuWmjmbcGw9mmLWvwI0AqOqOApQveJYv2GJofmAlyikryuPk06ifa1dSN~mcGxzPAQ-7uDnnf9FyrNwtVhHXGARxrCGqhNf9LoerT9a3LC2f83-QDz0nSdG2OSe~w9K-~8mbBXsVckVQObbuzwx0ZC5AZIPZXb8Pw4tVga~NCU2~OElo0RdUdYcj0FR0ex5SpS-QNMw3DPln8PVcJ0x3oppJHATZZhzG5IHI06GhIhB8vF8R-MTOZYL8eam6zzHksmHV4BHYE6fGfaj2RqDT-h3PNqVJVRAF98z4nXCr7jwd1J1P21vW6g__"

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Xenium Ranger 1.7.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to latest version.
  • Image-based import-segmentation now compatible with segmentation masks.
  • Improved memory usage in the import-segmentation pipeline.
Release Notes

Xenium Ranger 1.6.0 (Aug 17, 2023)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: ebd970ceafc057668b9e664df310a5fb
    curl -o xeniumranger-1.6.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.gz?Expires=1740309742&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Tn5W-U3eVSZO3Hzq-h6ZfkFXeaX6k8cMBsWmwJ1qLIpgTSP4nFViJz9-sYZSJUJIdi9o~JuxsHDKlg-yuGshtTYTshUdX8rVEBqyKQdez74o-TbAO8uLRNJQukkTKel~7GLMJ6fWYhkeo-xbifXsIIlGzEIhDsbifwvVd2-ioWcM9q3w0yPFMESEWF7uKtpuBLhZflikZRDRajpI~42NTcqO2sNhFSysssDGE4soca0O-0L6Dq14ESWpTUbweOHy6aiypyDnNOQHuW5l2owFAxV9rB7RPe2hSm6XGx3E1anh-ff3o5Smr-clZNq3uA7hHaVYFON4HIfv7pizan5wRA__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 6fa799cfeef91264fdc174ad43b6da3f
    curl -o xeniumranger-1.6.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.xz?Expires=1740309742&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=PeJzN2avZvXHlfDh9UryUsqHlRu-lXkEYgtVilxsj8EX~YA2ugoMufplgzZLXXSYC7uIzkIkhz7FQcnvEF7SBgYSwLh1jiYQAJ3fpNOTG36-tR~SMLQ7JmLzH-34QraVzE6I35g0dhn~~a9teymUhgaMg-Z-H5jsb8Xj9uPeaNyEZV1YWlA3VjkfsRtUj9G0ypzfaVunhvDMv4~lHaiYo6XIe1K0tiWA4Ux4o-HppAal6EPK1h7QgOrbUZVEoLoF6UQWWCrVQIEOJnX~Wzcph5VptaH~1FLPItqPJOuUrrBjIvEN19-mm6CBpfNdVMEkBcWGtGRkv0rw0mQt2dk3DA__"

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Xenium Ranger 1.6.0 highlights

  • Initial release of Xenium Ranger!
  • Resegment Xenium data with customizable nucleus expansion distance and the latest 10x cell segmentation algorithm.
  • Import community-developed nucleus and cell segmentations in multiple popular formats (i.e., Baysor).
  • Selected the wrong gene panel when you started the Xenium Analyzer run? Simply fix the mistake by using relabel.
  • All pipelines produce the same output bundle as Xenium Onboard Analysis v1.6, so they are compatible with the same downstream visualization and analysis softwares (e.g., Xenium Explorer).
  • Backwards compatible with all previous Xenium Onboard Analysis versions.
Release Notes