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Previous Versions

Xenium Ranger 3.0.0 (Sep 4, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.9 GB
    md5sum: 10e28b33f0236a5e62d615dcd921a9b1
    curl -o xeniumranger-3.0.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.gz?Expires=1757877111&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=NxNMowMG97VAINKHBWASdkbDw~eYuX0n5kyQ~zG7gBaNee4kwtgGo83OxKEeB0S~vAWSDKml7A5hgwuwzFEa6pkbu7NrZdx81W1Rz~sl40iENq~bDN~OB0LfQbptpeseJuC3eJ~CjaYsxBYZH~YRJUuORZ6W6pR2lAzPAv-7kimwGa0L24QvWLfkzDWcjUPEZehDKNfpg2XTkOkc7LJGvlzZbyYiUUdSPoW~zfxQP8CDUcyu89UUQj0pyEbfGW~V0eOHD-CJ3XsZHHXzl3FkVmwgCxxvSonGf40f7reenNadPXQY0vOOYVW1xKcPIDrtYPjoYHGreR62Oj3IJwRFDw__"

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    Download for Linux 64-bit (tar.xz)
    File size: 1.7 GB
    md5sum: c31be85a7e19edb8da484c295f3586cf
    curl -o xeniumranger-3.0.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.xz?Expires=1757877111&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=JfxmANoltCrTpgAeSyHbmL7kAXDQEyl3b-EPPPbdQqjst3ZxObTx39qSvP61PXWpyDC9NHkmX5aXlk05FEEvgGm13NUlW~j-bMBQ3wx29yPy3bZ2cHPBMNIYTilgPFPqSZL-RifCkrh5tINvr69B3gL-GRc4qHEIzOOeuSNr0oYhPqao7aF3eyHBNNL69MX3vMX8bEoWKkMvVylEgBumZtTA5PXqljb7kwbkEMkdiMoCOhKQBcVa8GRFECHFDX-9hmdRGbT7bsuE~QyrUJ9Eli7fGCAUbG8SXM7unEQ4rLpwdw0XDPicccnqILyuar67fWPH25WBLa8GMtXbhCwNnA__"

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Xenium Ranger 3.0.0 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Reanalyzed data gets updated scaled transcript view in Xenium Explorer and analysis summary features introduced in XOA v3.0.
  • New rename subcommand for editing the region and cassette names.
  • Robust to corner cases of importing transcript-assignment data with empty cells.
  • And more - see full release notes.
Release Notes

Xenium Ranger 2.0.1 (Jun 10, 2024)

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    Download for Linux 64-bit (tar.gz)
    File size: 2.7 GB
    md5sum: 45d207dc432226dc003a31a287f5ec08
    curl -o xeniumranger-2.0.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.gz?Expires=1757877111&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=KDSitFoLAc1gkeM8O5xcoRVxAnrC805RzOCdfQYL23cY66IDviTLWYnA14JjDejL3DnBZj20Aox13euUcFtwn28PVWACIakQW7yBe4PE~hklCJc2mX7Krst~~1xJ7LkhpMXb4Lo8rMVTSYWqQzoGeVwBx6pLQ8qMzcEB091DgXJPtSPAv8YcrO~oYJ0pY-iNymmTMMDycDI~rugJq9yOt6gxk1v00kFcNKHNeAh~bXrMPZA3HMpv0KwPeNWQ3QzoX4i3LPjmImmlCj-cKmm-MXg~nJ7e1VpWF498KEmq8tTV4kpk~bkMcrX6iy7XPOrDg9Q9Fa0H8vpy1tCx1v8vNw__"

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    Download for Linux 64-bit (tar.xz)
    File size: 1.6 GB
    md5sum: 244bdbb3d159ff557a7747c03ec487a7
    curl -o xeniumranger-2.0.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.xz?Expires=1757877111&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=KIx7mAwLbiU7UjKP6jD4-DysEEkrDRyObhPaAcKQRz5V8sTsj0UUlyrkUAy9LB-lUlq6VWZJ87FVfSKulQQhOUABDoQgLZumDxr6D-AkcJ10VfchS~7n5Tv0GmrWFIxoyhp6TN2VvBWSG2pOOchzVD95575AEiDu2WmAl4inVdGgBQucjTdjiM7TywHW7IvhIFmCi8oftD1cmYI59ofYL2JeGzOVK0t0~cZKUfJhACKksfxOZfZD~HYoluYpMv7l5W5BlG21CrySYsaxFd8TKQy3Gh8cD6JodZoDWp2PwlYQeNbsyzIWwMfDmqJoeFHhVcSjb2cxU3plzBGADoqZPg__"

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Xenium Ranger 2.0.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Default nuclear expansion distance is 5 µm.
  • Enables reanalysis with multimodal cell segmentation algorithm.
  • Interrupted runs can be resumed.
Release Notes

Xenium Ranger 1.7.1 (Jan 23, 2024)

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    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: 51c373964e46c041e08ba73888657edd
    curl -o xeniumranger-1.7.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.gz?Expires=1757877111&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=UOhO~4kFhbfotKnFvGESZisIN4pii0v1VhQ70y7wJKQ9vTjfI4a-xsxgkVfhP1p2z8DyB1idNsway-ua2BjEUx75AJXb9ytIvQhcYjj-ayDJpI0MZy~92DFQumQjRuxgthr1xZCruNjbb-UCplg7IPm7u~pQHPbLmiSk0PDMTVz0kFP6xOaT4kgcC9K7TYCtQD8TRUSYesgbFuXGlHhQ5DtaOJbkl2ZTJhuWJb4IWZFfNQ7sFDV6b5oeQjKlj~gAY7Kpm61Xp6Ns1~CmfLKpNcIM1tcYXZE35CSmVfqUt9YpSQh3cI-hX4x3ioIelJ1e73c1nLCc0pnU7fzLW9N2pA__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 43e6e4433303aae30973682dc5219f20
    curl -o xeniumranger-1.7.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.xz?Expires=1757877111&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=e~Ee2AqqNnlVJT-MThwPv0u4OJU8YxICyV5iQiswX-0~Sl58j48kxNXqWuXoh2WIHwVUOvv8yLz2jAt~Rl2yWn9P-F-FOqCn88nBRmpkIQGKACZ4dkhlvWAf4q6GZOv6OD0hE4VSP1tca1EhhAdGpaVK~j1bsfdOwLNMwoeI6XIF54W2~LmbFG3t4V-4qU0xGm9Jzk2ND7oXlquek-52gPlEadTRtLJ9cid0xtf2JJcKtpAqN3DOvBWFGzmFJSyJ5Jtu8lNsr~r1ag~hXkZ4trb-Fv~bSvBZBC-hZ-nCvsKGQ2J0v~HaJunGT6qzV8tlbsGhqby5MV-RmD00U49arg__"

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Xenium Ranger 1.7.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to latest version.
  • Image-based import-segmentation now compatible with segmentation masks.
  • Improved memory usage in the import-segmentation pipeline.
Release Notes

Xenium Ranger 1.6.0 (Aug 17, 2023)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: ebd970ceafc057668b9e664df310a5fb
    curl -o xeniumranger-1.6.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.gz?Expires=1757877111&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=lehV~eBxHF~-BoHB21EZs55eUMZLngeNzHYLeHD1cBEsUhqna9qvVEspWCmmo5d~ZAsw-N4dvVP7Q1qUpLNlMI2c8ON-rBya9Sc-rxAtlB878X85ty~HMfgQc0xZkLsdTSLR1cCgrowS1F5Jy-CCt~Oir~W6MObruAzp6xbhbFHa~ceHId-Ui8yWyao7bR7nt0TZ8tJlaVQKDsaamYz2f3N-qDG7Ku6b27RoxlGlssxWRKa8fExOQKpGF0kJXvo9pvEalFRwNdYOJge7ckyAaoY51wT5w6djYpw9HwlhIiwWQt0iSL7FUq0yZC2CF8ZmLkHMqXifRvFGQsAvAFDpGw__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 6fa799cfeef91264fdc174ad43b6da3f
    curl -o xeniumranger-1.6.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.xz?Expires=1757877111&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=HH1t3htpEOZy9dYFV71JAT2aUMVE9uyRL~4uYziBWAB47k-HRlIG2YFHiM~b~ZuyQ33xHn8XTNsEtU9R4XVPmrtluluTeq56rAd8qYNiTbzKdSy3VY1Lp-o--AURVaa7Z-xA9d9Vo1C4EXoKWEBvAgqPLmw-~EcnfItMkYMUn6tpYcqKh5Mb9Z3f77Imw~x0MqRUMbwSjcKtZ8W4baZu~O3kVnT4DoH5W5W3uynKY5nR5bVKHawguSPUam~C5v0pnKlpEg6q1QajdztEH4lGG~fjIKEZSiIzfjC0kIccQUVjoHCOkwKlSQfZsNVOdMgPW1jgvenEo84Kvtz2zrzq9w__"

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Xenium Ranger 1.6.0 highlights

  • Initial release of Xenium Ranger!
  • Resegment Xenium data with customizable nucleus expansion distance and the latest 10x cell segmentation algorithm.
  • Import community-developed nucleus and cell segmentations in multiple popular formats (i.e., Baysor).
  • Selected the wrong gene panel when you started the Xenium Analyzer run? Simply fix the mistake by using relabel.
  • All pipelines produce the same output bundle as Xenium Onboard Analysis v1.6, so they are compatible with the same downstream visualization and analysis softwares (e.g., Xenium Explorer).
  • Backwards compatible with all previous Xenium Onboard Analysis versions.
Release Notes