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Previous Versions

Xenium Ranger 3.0.0 (Sep 4, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.9 GB
    md5sum: 10e28b33f0236a5e62d615dcd921a9b1
    curl -o xeniumranger-3.0.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.gz?Expires=1750095369&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Ec46S-WgD~HmLOyLTjJ3FzKTroUGMFlnyKugEHY~Lif1VsQ9eZsDUh1sE8NP8d6Fa-akof8zvzD0CXvFwZKq2gWBC9uy19Yo0OeIb0~sV1nBhq2FynthV3ZN3AyWLGQJsWmrB65LScAkfIsK6sYq9MGdOmEJyPua5UAaQnxWg2GL~bSOWoW9Wetu3mYVKly83Q8Lg3N1hvSRXBJ50jtTsR2b6-iC7HicGzH-xZZWdrfspJujc5odntNM-sFUPW1xyzeCRkw~JmSrz03fQBZ3pUO-Hq3g6fDXugDIr1BZUZBhMXJLzSJHcUPCrVRGla12xB7qOQa8qLuFui5RMsCnhw__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.7 GB
    md5sum: c31be85a7e19edb8da484c295f3586cf
    curl -o xeniumranger-3.0.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.xz?Expires=1750095369&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=BXPIkDGdhc0UUJC2tp4yAYOqZCo~DqJpTSBhO2icIGnneXUqJmPrS82zPTho5eNFhUBWcG4osxIO7UGt1AVgVvA3Y45YlyrIkRjSythq~YmEQx6EK6MyC-l1nTFFqB~xJsw78mJsQneI5w8Ua34MvvB97rogWEyHgCy7oXAlImAIJHFqRkrJZQkEYQKu53TBjBjx4F72wUkopum~g2hpf-cm~joh2yjMDKmmj-Edl2-wWtpwZgRGdMnEMKyRv-2adV1997wL4dV8Zl9y5JdzBGXZ5FSyPDFJ8Y3Ts8Nh94TMApvIblylN9IpKsG97lkc-06X8Wu1c50vYahhFHZpAg__"

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Xenium Ranger 3.0.0 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Reanalyzed data gets updated scaled transcript view in Xenium Explorer and analysis summary features introduced in XOA v3.0.
  • New rename subcommand for editing the region and cassette names.
  • Robust to corner cases of importing transcript-assignment data with empty cells.
  • And more - see full release notes.
Release Notes

Xenium Ranger 2.0.1 (Jun 10, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.7 GB
    md5sum: 45d207dc432226dc003a31a287f5ec08
    curl -o xeniumranger-2.0.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.gz?Expires=1750095369&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=XKvz7Wb6Jx9L1HD~3-~e~~-bEreX52HMOZfJDshxfsny27hvEv6Ko63tNIB5UEkyIrFKksNC6uky3moFg1w8FBBIsShgt4BUdP8I1W5rTIf9G3fv0wvZr4-q6QrqiTlTOj6tGbGlCq-RCvHSLB5CyKBGzAKqxxWqeArl9L37B4fRv7EeveVTxqHtIjokbn4NcCxyO8CrFz2udJ2JxNI4q8ph2Z9xqBbI~Z0vEV4lWtFK0lXfMCjyBEayZWP5dDHvzTQmw4L9~JvXf~M8CHxB~71tdFKFqFLJmHTba3ngb3Ai-cifUst3GYuMPB~AjNDQKtavFBemAq-0gonNds-7qg__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.6 GB
    md5sum: 244bdbb3d159ff557a7747c03ec487a7
    curl -o xeniumranger-2.0.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.xz?Expires=1750095369&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=POUU2VlCtfxlnj6-MWtldMLINgDZsdbIos2HXpiLjaXRBqVtqrdD6kJSEouoF3exbZiS7Ap4UwjjNMJFzVHbPSMd4oyDMJqBaa-GGMiXkmE7ypRHPAMYFncELqwc2XG9db~O8E87VcKbETcIPqRPeFX3NbSQnkST8T6zT3aWrW5j1ZGNjF70Sy-KCV4ZhgWvu4S~rPxcxQeNLMX0kT0Hbvj-6sxeToyc6tNVdE~DE7NufWVIw4B-0JP6F1JSWmwevq3~YOOoIJNWl-AnFqfD727j2OiSK1m1fpDVh~w13Cv56CVCDUxN7ItP6fgqwxPCoWVutwZQg5jyvX5fj3annQ__"

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Xenium Ranger 2.0.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Default nuclear expansion distance is 5 µm.
  • Enables reanalysis with multimodal cell segmentation algorithm.
  • Interrupted runs can be resumed.
Release Notes

Xenium Ranger 1.7.1 (Jan 23, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: 51c373964e46c041e08ba73888657edd
    curl -o xeniumranger-1.7.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.gz?Expires=1750095369&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=bpkURBAnOT~M2wEvPqdEcXaX12jB2TBtcCX-MlTxLJJTO-o6x9OAYkUY99H0o23YY3WNaKgS4kLFqx3mksW3Dz2P7BYalbU3ePqwfqjNT6PEBlJWe3y7W88xhxV~wspXpctkKbyXk7OvAezqLXIDbFD4ESk45GQnje1y1~QCAY3o1fmXcHdaIutwvPnbAefgV2SnRfdF70veY-HxNC60Rkzkg4F-vLACpzLPaL5bRPEVnsnXQ4o8He6mV8SS8ydNjO2MEEvjUWVKOvmJcEvVoB8B5jg~ejpH-Em3JHDi5OTGsAyXPe27XOjHR6tPpvIFEnRIWykXDV6KguujVxHNUA__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 43e6e4433303aae30973682dc5219f20
    curl -o xeniumranger-1.7.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.xz?Expires=1750095369&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=VHLmwplA7vEUJnMqV1ood3ryGXiVmh6gNsnGnsew3lqqQod0RZ-dEPdLC9CuBtyfcAiUbfFCyD56VXogtvySxO0WHsx5kik2M0tOC62mBLOFIzG-J-zoxDap67iwTwoo~zYVXVEbABscQ7j0-dtf~HHXxLJYAVl15phE8iDkUOQMDBRsH~JhuH8j0y0u3jhZp1dIvhPNb9dxLNKH6eD--M2I3PPLpjhRgZtf0~DO5uyDfrat4id3AF2pVBcx~7nbttYdtADm1o2BjNzJgrAJL-ii9m7cXeDQ6i0X5jrAbnaXbKFTVdiPmxL~J3Yz4LgViFleq67LQ8hArjeb-qcoJw__"

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Xenium Ranger 1.7.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to latest version.
  • Image-based import-segmentation now compatible with segmentation masks.
  • Improved memory usage in the import-segmentation pipeline.
Release Notes

Xenium Ranger 1.6.0 (Aug 17, 2023)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: ebd970ceafc057668b9e664df310a5fb
    curl -o xeniumranger-1.6.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.gz?Expires=1750095369&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=VnM99IRooMgrXVFK1N91FfmpoBkjZPlIMMcxp3~eiGuaef3874547pYm2IvLMC1bJYG1uZJNMS4wg~5NEjC57EeN05eMH3mqNArG-fF1DXu4voxEuU68RwZD9J92sHrXQhFg5SZ6bNa5Vu91YsPNkUdv0du9oCFuwgNRZff56HIkubOAnjInI4ZgAomtPlN-R~eWiOeqE4HAAcXE~z~2wZczFYalsJSn1tuU~K6RFWysaS7mbfQgkwVdBq59mhU8yC6iDUUdCHrm0II60ZXrNiDOnMs-YrEIBO-1cWuWfylBthXX8m3YkqEPOhrawUu5S995KbXu8ovvmNbcnXo6gQ__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 6fa799cfeef91264fdc174ad43b6da3f
    curl -o xeniumranger-1.6.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.xz?Expires=1750095369&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=lFFm6bIM1Rs2Odopdq1dhKWt8ygmKs~14EI9Y4cxYLq0S5FI4qz3SZiEGEKpeCEiPD7BXxGxqQbcIZ1vQDxVE6WAq~O7h49c4QaaNSF5le3Jg7ShbMQ1NQXw-M5iWPsTbikZnY9eU1OLfplY5R969Yz~rE4c1JK7LQDEjZOGbUkEeK~Wu0x83bd7KIuaWmWybqmf2~A1MibUtSF5C3gSkuu89j3AGy5G55Mra5h9uUAlraMlIt21nOhOKjqVtmTcyxPQHau8D2AddApaSN6gjuQZDp3ZMgkpgguROSk6vjGPWQy70xtwYpWKnWKNLytLtUbLswyaLArCxne6uL7VOg__"

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Xenium Ranger 1.6.0 highlights

  • Initial release of Xenium Ranger!
  • Resegment Xenium data with customizable nucleus expansion distance and the latest 10x cell segmentation algorithm.
  • Import community-developed nucleus and cell segmentations in multiple popular formats (i.e., Baysor).
  • Selected the wrong gene panel when you started the Xenium Analyzer run? Simply fix the mistake by using relabel.
  • All pipelines produce the same output bundle as Xenium Onboard Analysis v1.6, so they are compatible with the same downstream visualization and analysis softwares (e.g., Xenium Explorer).
  • Backwards compatible with all previous Xenium Onboard Analysis versions.
Release Notes