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Previous Versions

Xenium Ranger 3.0.0 (Sep 4, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.9 GB
    md5sum: 10e28b33f0236a5e62d615dcd921a9b1
    curl -o xeniumranger-3.0.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.gz?Expires=1760556172&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=PUDFyxnWNEFm7EptuRsKoior~5IK0cGfmvAx8QnMnAqt-UvkEyiNTu~LnzKtOrd6YduMROr3LA1qlfBmJJ-OU9VCIhnXiIT1aOme1DCbfFk8LppdtR9xfa1nUI41Cw49FTOuUS11uJvLnRvyKwGN5urlhECO-QpDTzqTR-BS95jzZCft72No6r2ZleJLQNhYKYrl2txtjkXFQlKeJ-tzRzZI2mFXM9OwiBXUlvjCEgcwJoLUvUnjFuNPKTIYIFkkFej-Obl9fBMR9w7pBVJ~UTs-gFAobb~prfO28SV15vfNtjQWUc-rKF-3IKGwfuXM~VNj1ntZn10XiYp~v4XEuA__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.7 GB
    md5sum: c31be85a7e19edb8da484c295f3586cf
    curl -o xeniumranger-3.0.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.xz?Expires=1760556172&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=lj0yD5VEkGu3385T0BKvs5qUeM7TRRN80hHO9jFUIoNwN0XrJGtbkkhsFFgrSRxKIG0NElWmuqyU1MjSFAj0VYOK5Bch4bA-MwJPxnNjJR7ZbncAEpWXBtMR7A8B9bsW-Att4ogG1Ww-UHLRG5REgbbDqiH1fya2eChkBa38oNBxlsFDMk64-jZI4mBO1HucqFp8jncBNTP7A~rTNRezDYe1f4LWmt6ZKcpCgSGB2IH8uJxE6ZFzb1kTzL0m2nms5BOAxeZUa8DbIANvUT~xxrWRO6fYz~4Nn~X-ciFbSgC979ViOReXTeEVlC8yoeBrC~MVbHFWpsWmZXg~4bZbng__"

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Xenium Ranger 3.0.0 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Reanalyzed data gets updated scaled transcript view in Xenium Explorer and analysis summary features introduced in XOA v3.0.
  • New rename subcommand for editing the region and cassette names.
  • Robust to corner cases of importing transcript-assignment data with empty cells.
  • And more - see full release notes.
Release Notes

Xenium Ranger 2.0.1 (Jun 10, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.7 GB
    md5sum: 45d207dc432226dc003a31a287f5ec08
    curl -o xeniumranger-2.0.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.gz?Expires=1760556172&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=LUqLoHy1IRKdLIRk7gSOr-f33nQ0dX3LPuGNrUWE4sQ0gkwikAa3zRRdveLClrlJ3qxhSvjLv869jm1CpKvDye9BZlfPdMr1y35~pnRREb3Fihu10MQmy9P2YuRJ~LSZ0EkhUyiyghNhsktu6DAhWZ1nb5YbCU5xk0y4RXBWSdMKnqglKhDg9wj-UUePlL4M-Z~dZahxcYgF7vVbATofCGWVBYUZcUo5esbAvZyGG1-2IQpD1MUgAqbxwW3qDMQy85kXhz1SqeM3DNGY~6s-P6CTfzeE9SWUN9TFEl2qDkY3UtqWwV~B5vLxs8cB6staF~fgf7RckRHlcL~~L3DONw__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.6 GB
    md5sum: 244bdbb3d159ff557a7747c03ec487a7
    curl -o xeniumranger-2.0.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.xz?Expires=1760556172&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=LHV1zEJEuhdrySCHNhYnBlNPZvnUdtM65tLb84Q2qr2YgdD5XfqFH2vbOWOAdcO3~omJxYcpXt2xnzA45IxNXfY6R8keFqWInEvmdE0pD56T3uB~vSIwsUEfFs0YQofiQQLu4cbtrdOvYCBEi469nZvayy4DfjNgJ8iuQJFBsAekic4FI2RT-MeTu1dCkUl1DNnLBMRTMVtn7tv~cEZqQEjjKYSr5KpJo8KGoaYEggBJZxbKuvhv6e0TLtRmZ7GUJ6FisUTaoJDz2emIHzcZffR2RgkoefbaLIDRvdFwCuE6XLOzaOqNShp1pABBcl6K7PJA8BtB23U5QOz32k~ywQ__"

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Xenium Ranger 2.0.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Default nuclear expansion distance is 5 µm.
  • Enables reanalysis with multimodal cell segmentation algorithm.
  • Interrupted runs can be resumed.
Release Notes

Xenium Ranger 1.7.1 (Jan 23, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: 51c373964e46c041e08ba73888657edd
    curl -o xeniumranger-1.7.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.gz?Expires=1760556172&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=nqJbq0kqhVSV1JLxH08vWuAQMuDgQUR83Pg~v3eBT3bPRhVo~jHNeDX750qWleh9mfOs1NVNstrY8PMZKFp4PuoT5w1ySL7Uq-W3YSfjTig5Oe7-pvNAttguBNrlj6CH65XPWnePO3OfJ6e6RdxOelJ4jL0N6LUXa9SOOqE2bA~2r377-kDDB9r76r0-UOmepTuY9yZgisZmp9uEMJVpDzmotihm2uNhVaSBPAUu5YX-I93vC2uXAX7~MfA2vB4izC-iVc9weX~YiLQBkVxBLkOh07NAwW9U0bKQsStGtd~WP7iMC6A3Wkhc8Yf1KEBEyrMKpFx6Gkp8caPbUA2CUw__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 43e6e4433303aae30973682dc5219f20
    curl -o xeniumranger-1.7.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.xz?Expires=1760556172&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Kis4DP4raD35-qK~bnm7czkirlhImiq3PeY30-hV2o~FXFvX2moGGXs2s7LVtFG9a5B9e6oocUFWN~nE~07NrMWWMdb1SJg5LAqvQjZzYDK8IdjQr-OvUEdXp1sXhudVlZAAHXyuh9xafgEeO3eVyliOrY54a6q4F7uyWL1BUdNBubSM~d8mnWjv-F~uCrFC5iIPpFqvSNdT6g8s2kkl-U08Sm1FElOXk2KAEpM5DR-L4fInu6WNXt-KqzLGx3q-SpPreYODd16jNFFlHfuW00jPvjmRtx-JPJ0kDutBTsuYgCW7LqmjH9JFVy4OieJhHd2iZb2vYzmCrnoyJcLyBg__"

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Xenium Ranger 1.7.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to latest version.
  • Image-based import-segmentation now compatible with segmentation masks.
  • Improved memory usage in the import-segmentation pipeline.
Release Notes

Xenium Ranger 1.6.0 (Aug 17, 2023)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: ebd970ceafc057668b9e664df310a5fb
    curl -o xeniumranger-1.6.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.gz?Expires=1760556172&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=V3ZgClX6i1l2BOwgjfDch7JOVyp-m8UMO4VB2MZPm28gE0DxsTGAhBG7xcDLiK9w8A2ay3uwrgrIrfLIC2genLSshIuQzDYZKeQatDuS21JMRmk5951gxvbsl3ANYqJwJi4PlrfhH1FakePCQ0jACf8k-HDhb0d~tPvwOmlTw3oLatGE533GLwZ4~Shr6-8DGcinyTv6ckb0~ubjKQbnf6keF15QzRAdFybHD4sL880EwrJ8ZCoU4ggEYJ0EcseubTeeOcvz0wgBUK0Aa7TWQ9Mh1G~Mik1jGwCwO~grliUN9ADcXxbJwOr6PLhveVQn3hcvSsY7BmbXbKgFvrSOZQ__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 6fa799cfeef91264fdc174ad43b6da3f
    curl -o xeniumranger-1.6.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.xz?Expires=1760556172&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=oZwmPvjsdcBhWaY3IKFVawYElUYq0rYO4B-bMYu~NWneXBGIROXE3Z5WfuweqBsFoV5UovLKO7Eq~xK6XKgNwbUeFWmTuEWv1juqWybwXhMwKNv~qv1RA7~yuRttd-208Vr0nSXW8N6qWUBK3bU6BEqB6uD8vjGFL5DZyZj8i-xUZjBbGUgVyfOaGDN23rY8bOq4HNVknJ14P90x9hEAvDNOrzjLhosFUmkL2YbX44DBHSqqn7GeNWp-XlSeuGk6STTRDby5vYzQ44~O8bT4xCl1hUrndzXchAzNiktfWrdRg5Qc13Ct~mzolnpF8FBrZkkJHTTs2hl30xkBDVSNwg__"

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Xenium Ranger 1.6.0 highlights

  • Initial release of Xenium Ranger!
  • Resegment Xenium data with customizable nucleus expansion distance and the latest 10x cell segmentation algorithm.
  • Import community-developed nucleus and cell segmentations in multiple popular formats (i.e., Baysor).
  • Selected the wrong gene panel when you started the Xenium Analyzer run? Simply fix the mistake by using relabel.
  • All pipelines produce the same output bundle as Xenium Onboard Analysis v1.6, so they are compatible with the same downstream visualization and analysis softwares (e.g., Xenium Explorer).
  • Backwards compatible with all previous Xenium Onboard Analysis versions.
Release Notes