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Previous Versions

Xenium Ranger 3.0.0 (Sep 4, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.9 GB
    md5sum: 10e28b33f0236a5e62d615dcd921a9b1
    curl -o xeniumranger-3.0.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.gz?Expires=1744439137&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=FAbL~6EXCU7iaM2MrYvg7Z76zj1L3r32uUtXNzSWrJPTcOkI2tooYLYa0E0ytn9IY~~xrMYUsz90S5GilCk7BQ5R6hFB0ZmRRnWQP6ErsktPR5yivDbVaq0N8KWB3HaRKwDk8AOTd~MuHI~V7Z8lnnhKKtrwBXLKvIRyxUDuYCf2wX5D0WXipZvfkVpnhPuMChfYDpsJDFeOVpmGdej6pPdqstRd~mqZS-i3lvtK9BfBPX6Nna3CHTXhaA9LIY3wuGhUitdmoJ6QrhIuRqbikv5avrRnlvNBvD1Z0nkGWlEHH2vEiTZLztg1T5lOJvV~t70xChsa28jLL0fdC1CKeg__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.7 GB
    md5sum: c31be85a7e19edb8da484c295f3586cf
    curl -o xeniumranger-3.0.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.xz?Expires=1744439137&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=UDeA16S6SRrX9QE5790QJPg61T~wN88JAdkG3yQUlW4cpV0MGYTvGFftQYkvf~sdDCJeCozLB-gt9fVTwybdsWDc63P4o4-0wnBPPn2urEKluTt-DmX007q7Uf6LqdDJiwaykmu9hwHMAOoPkoveCzimzcZKvPsJf0GWxAnDZBCp00JzivdnkgenrRE2WeZ93oVeaGXsFWNCgRlTkAULNpsIWFizTB777-G6pKqoiGUDmdOCLG3-NYCtcnDbxl0L1w9P2UyayaUa1L6h3oen41t3lsZnOdms100gQUae9uBYDiqoDOcQWIFFBpKf2jE~~hGvMZEpfAto08rYAyv3cA__"

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Xenium Ranger 3.0.0 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Reanalyzed data gets updated scaled transcript view in Xenium Explorer and analysis summary features introduced in XOA v3.0.
  • New rename subcommand for editing the region and cassette names.
  • Robust to corner cases of importing transcript-assignment data with empty cells.
  • And more - see full release notes.
Release Notes

Xenium Ranger 2.0.1 (Jun 10, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.7 GB
    md5sum: 45d207dc432226dc003a31a287f5ec08
    curl -o xeniumranger-2.0.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.gz?Expires=1744439137&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=HPt-eFBaWCtUYI2vaW1A8fNTftccjMWuqzfH8Tn5yriypGHK~ROwwmX~JmKaEFUjCC8r68PM2aPwiyDhq-0ZZ6pHCYcSf44p28V5Gf6sOrx8VMCHoCDfbGg~sKY8olyJndL0MMGjS0aEu-vCCo39-vWY5UmeTpI52jVur85vq5O0lH1GKm6NH4MS8-38nNcucc-HAudSxwUdYyfUnpS06n7yvwXPdzkB-gRQM3POoYq341cS3U3HeH4xHFfDxJk232ohyURmrDNz3pyfuAR823HHs6gO0adMVzhfD2QJ06~qcOB0qegDl9lyDvoMZes8AXzhjDDF3NR5A1hWqKH9-A__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.6 GB
    md5sum: 244bdbb3d159ff557a7747c03ec487a7
    curl -o xeniumranger-2.0.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.xz?Expires=1744439137&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=ovmJtw-TTFj7Ek3EvNPma57F8bA~ohCsQvzSth8n0KpOOJ4CQ2Hyb~6x~1AoaqbkVG9TQ3ESJFZUqgQeLz5DeDTTxjGlRXc-u4YZldU39ENh~Xpc2b~9Ilh2U~D7xoR9RATM5iWgQ-YOIggAyyvXlOTiPdUZA07KKHe7Lq6MgASooGh56p62oDSAYwkLhroBUdO9HFZfK7n17Ak6peRR2~1OOJ0XfqbzInqHKuz9aGJ-AVwBN3C5wv1TiejDIwhP4zCSsZjiXb9F~PUNejuTvrb5MdtVrTP1anI9MKdrA4yZflZNTlf62PiMRX7c6IVnutH272Msd09rlJHNOqQHBQ__"

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Xenium Ranger 2.0.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Default nuclear expansion distance is 5 µm.
  • Enables reanalysis with multimodal cell segmentation algorithm.
  • Interrupted runs can be resumed.
Release Notes

Xenium Ranger 1.7.1 (Jan 23, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: 51c373964e46c041e08ba73888657edd
    curl -o xeniumranger-1.7.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.gz?Expires=1744439137&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=oNR8DrKnkQU5cOxFQBM~vRCkcIXBUMylg5H8xWNYi1toAYqrXeclyXZGRWgLkr~HMwR4Fo6PJqnqyDvo5Y6zn4iqV1tNdIzr61iwZYxSln~LAr9UKiYrTx4h5E1iKLVKrd3snt8TvUKninGE9-otRZgDlb-Qxed5ylWHCBAkXokvpExZJIeYY6LrhW-dF4W0jFvvf2Oq9zcCVQdLm~KcX81CD48uCxyZbfGzjfyVd-7DTkqjzszt07ztQhSwaKCNEr9vH~RGKXbeA6F4FMOBpP2bgpV02GAsrC47JlrTwYKA8tNqBjdOasBsjheidvJo17g7u91qvVkJUzKTgoINzw__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 43e6e4433303aae30973682dc5219f20
    curl -o xeniumranger-1.7.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.xz?Expires=1744439137&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=cF9pRF5Q-siNYzjfEacSdfOE-DnI-aCNyzVwgn~qOT3n8hDVMlLvQ9OY0qipsp6jt8JbmEBwhg5tSVOKW2oBO79FrQsqdy-wrHyKUb3SC8OzorfPkd-TJy7hAspnw08Fzn~vpgmaWbxW6noCCZ0eAo2Cf~vGzrunX~ZVk4Gg47YX66F8pFnElJQXyxVwygffJzPSdGSVGPHkjlAzBOOKwEhliYm5VoaEL4oeMagnDQ6sooqknGw1~9juqyudtzYo~NyJHN7MriLdCdrjnwcH1Hr5PD1n1E9Lp-CX64s03o0I5UpEAXzllHVohOOoOleR0Tq1uELaFtCmU-WsAFhYkQ__"

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Xenium Ranger 1.7.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to latest version.
  • Image-based import-segmentation now compatible with segmentation masks.
  • Improved memory usage in the import-segmentation pipeline.
Release Notes

Xenium Ranger 1.6.0 (Aug 17, 2023)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: ebd970ceafc057668b9e664df310a5fb
    curl -o xeniumranger-1.6.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.gz?Expires=1744439137&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Ry7aXH8NYL2JWL3mgmYw9jLHjHNRHas0tOK~BZCymZqCrMPf9avihauwlmT2vCQWKlIzRtKhl1SELhHxQg9Hl0TZkpc4DQjg57Bua0chq6MQgZWt6JIHJRsryMqpmMCK6C-kr2bIztDp-K-8aNWVP4qGPnk1kHSq8zJ6BEWz7liJV58-5rvuKPaLytP8uaCiW7J7ACkAKXCnxJcbRhDQ1fJ-nO4UXsNDTa2LTyBCZA8Bw09nCFfHzW2mFjqhm8No4Nal40grc4~IdcSvz5N-BlaHn~nvsBNOLUnWfGan-mlFKk906qAMPe-GPO5T~~Kx-4osswTFgfuQQctz9gye8Q__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 6fa799cfeef91264fdc174ad43b6da3f
    curl -o xeniumranger-1.6.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.xz?Expires=1744439137&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=JVWIsIx1-SKkuxxh9XB4zgFQo5ez0tBi-vBKMhgYPG3bo0FrKNPo~iy45HfHqTPuWGIHssMvgYVZv3ur2-Gf2r6mrIN92rbIcJQ54lhhsWY83VUwrGVDlZSKJk9WWUxHzC9FqO2IhkxrGwGIg7q1wN6eaO1t4BAKlgE7pQacJxQYjds4QP1wN3yCrCORHtuKmI1kAweH8kY--fqRUqgqD9xhNhG7vv9gxdb~0lWlWRWAWKwaCp-YI3WruAjzBAM6DVt0igTFmW4biOQz9Dt~Ir-HRLS6jAMDzRUHGrB64RpPY7XEgS8CXN5pxQYk98E0PXAZxH6489lEETX-7bdY0Q__"

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Xenium Ranger 1.6.0 highlights

  • Initial release of Xenium Ranger!
  • Resegment Xenium data with customizable nucleus expansion distance and the latest 10x cell segmentation algorithm.
  • Import community-developed nucleus and cell segmentations in multiple popular formats (i.e., Baysor).
  • Selected the wrong gene panel when you started the Xenium Analyzer run? Simply fix the mistake by using relabel.
  • All pipelines produce the same output bundle as Xenium Onboard Analysis v1.6, so they are compatible with the same downstream visualization and analysis softwares (e.g., Xenium Explorer).
  • Backwards compatible with all previous Xenium Onboard Analysis versions.
Release Notes