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Previous Versions

Xenium Ranger 3.0.0 (Sep 4, 2024)

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    Download for Linux 64-bit (tar.gz)
    File size: 2.9 GB
    md5sum: 10e28b33f0236a5e62d615dcd921a9b1
    curl -o xeniumranger-3.0.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.gz?Expires=1732335943&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=QDV3M78GI7YYIjhOKHEa0pl5~Q1dfSkcQtAnIkj3osp7Kxb8jIDz7iDBcy9nyuQ7gJivhF~bGf3~E7pc6ZSQlm2Oo1Yrg~OIB7q0Vai18b3GJuuS883EyHTKXOSeMucZMwgX~SpvBwaAp3~FhBjLmf1nDdasaZ3OT~bdRsxroEmthh8DbgcA8uBGgfWcmGrlUPe5A0DvUGcd6P7d658CB4iO3ilg4TIhRgQ4WGyyle6e04PXArUpcZW4JG0jtks5UTYtbjOaqaTWJ3cYb9zKuNvlBqUcvIaRwQy6oTcjTg2M-dZn-QgTQPCFH0fO9mwnYAGJZcnF-68Vrj1GJP3k9w__"

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    Download for Linux 64-bit (tar.xz)
    File size: 1.7 GB
    md5sum: c31be85a7e19edb8da484c295f3586cf
    curl -o xeniumranger-3.0.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.xz?Expires=1732335943&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=U0Wd2iJ0vPHHPAPBuO7wYk3DeVX~kIR83gV0bpWFtW8uBJ18eFeD2k1xNQEMqM7rnGX4~7Qtze-Am5tFiXFHUnZVOFohwAxa3FEx800m5M0ela1tCx6uEMu9LrEonzI-gPeRW~tY-NhDD0EUBfke0UzTdvc7b-SWfH2T7MH5E3eQ0rDOVTXcSWSgtbk3Wacoo1kB72kKnJb9HWGwxCfzbtMLZYv6VUHIMGqn9czXySIqqLJiJfHCpCZBiq7~S~k6TBru03MgAygfmcchjwyeIaOKx0MAC7coG~mSD4P3Og~CWxh0aYM4w7PitmGp6lNTQsgcobdvBoDsJ4JeaA0YmQ__"

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Xenium Ranger 3.0.0 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Reanalyzed data gets updated scaled transcript view in Xenium Explorer and analysis summary features introduced in XOA v3.0.
  • New rename subcommand for editing the region and cassette names.
  • Robust to corner cases of importing transcript-assignment data with empty cells.
  • And more - see full release notes.
Release Notes

Xenium Ranger 2.0.1 (Jun 10, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.7 GB
    md5sum: 45d207dc432226dc003a31a287f5ec08
    curl -o xeniumranger-2.0.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.gz?Expires=1732335943&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=P4LKVFKb9rqANDPQDdN2cC3kcBYuh82~0Mt3HW71OtZvlnmAvQv9bBzc-pTCxJKfAbwSPkocLKSiI~XRKSCuo5xEwFYU8Kk5AyxFd7mpVgWAA3~SjGj4~wZEyIA-XxxQM4ThFmA-h8FxUozQ6m3GLDf-bgYXG6JJeUreZOo4lHp4ioaSy2xXFZVL4VkG~Uc4q9nYkYDluP5pd0BMKYItDFoEVPv046350l2NgEA8z9sw74j01n6hYHy0-ltuUvP5StqfuqHBibE1QLOFPuW94OY-fAXoOCXd-izm2VLd4BO-a~4cD6CIY81PbODLW8tF5NYejlJ1ZHQ3znNhSKCrjg__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.6 GB
    md5sum: 244bdbb3d159ff557a7747c03ec487a7
    curl -o xeniumranger-2.0.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.xz?Expires=1732335943&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=gcqSJtWDAZh9UpduaGT6ChbKyNd0lGcNaN8OEQ3QloPcrise1Vcy4GZZSNAoz6HLfPqGK6Ls95nDMIiUJwatlffbFXKpU8BitHSyxxTPEsoq8MRfxZ7PByOr05WvDhmwmiIC2kI29QMPF6kVQulkD8-9yaYU6NT-~2S2hzti~r0oz1nlQRXqooy~M6OcrjSJHsaD1zcDFfYrAi5RbP-idXDPcOU1Ky6JvlwOLnhX5V90wIm6lnpu2HLCaTqAjKS2a4OlvVOSBFtFr9LzcohswyZEAyWa1o84PPLGI5JklaiQ4yjYhf24q~o37-mnaKK2OXN9FFqpVuKFs1pJRNsN6Q__"

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Xenium Ranger 2.0.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Default nuclear expansion distance is 5 µm.
  • Enables reanalysis with multimodal cell segmentation algorithm.
  • Interrupted runs can be resumed.
Release Notes

Xenium Ranger 1.7.1 (Jan 23, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: 51c373964e46c041e08ba73888657edd
    curl -o xeniumranger-1.7.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.gz?Expires=1732335943&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=GVPKbsHtZC4KmpQfQBww~wv8pyJb1s0cz~Bev6zBvbZ0XPv4iY-DiuCJmwOYkUf9EzOE2somIU33o0~SJ8z4v9mZ2iAvpL6o5zDmEBKJ9t~99A47cBrzGa4attLH1BEu9TrAqbPkAcOTRqedEK1UlQAcX8diZ8B5psvElVZXZWmQX-UPC3uil4FIsac3IcqICAZSV6HFpApt6hebFjkalfw19-RxkXTRkYcqiOdC~JofcvbRPRS4NEJ4n9alX8oUII-KbkEw19DzGLoNafU0mfUGm5OurHPwFPLGwQxaaUg9PnHZwoZRycsVRsLJNXTwtc6d2jPAbiFsM6Doe9E4qQ__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 43e6e4433303aae30973682dc5219f20
    curl -o xeniumranger-1.7.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.xz?Expires=1732335943&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=G2F81~iOna85iqbBmVazVdBmHMJTgyXOZTHrni3r5ghOcBjWbB0zOM16o0DfLbL0lHxrhZkXGSilbMzSglTSn11jzn4P3gwQbneYr6MwfRDWbfbd6PwRbdakckGFMUesZ8Sb1SGKiQHLeXK44O1jTDCYqaxDa2s0Xj9g1YXKQE~LnmCGfYy47QzzlLJsGx0mMWLEu1nDxKSwurZ7fYYqAXpxcIUkfhXlKSBDFGDFfaTjyMUc8lJPVLK9HlTbcbz8B1oQ54jRovkG4RK5U59OxAhu7pagdwWC~o~TAUTiHd9kPGItjz-GL9qQmKYtMyF2j6elL5czG8hV5iYAX9PKAw__"

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Xenium Ranger 1.7.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to latest version.
  • Image-based import-segmentation now compatible with segmentation masks.
  • Improved memory usage in the import-segmentation pipeline.
Release Notes

Xenium Ranger 1.6.0 (Aug 17, 2023)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: ebd970ceafc057668b9e664df310a5fb
    curl -o xeniumranger-1.6.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.gz?Expires=1732335943&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=YdvYzYv-KbTo9IjkHe~uOjFsZMS2oyGd3FeDWAwmQxSTPiHRUPzlz8LHVo0YXV1eocDP87aH9k1q1zaTeDYCN1cjNBeDKDXuZJ3qx5ndl3PR7r9iPplTmqRuITy5RNRLh5XQlxkuNl-RKPOPuncTGfALADh~weQzHuVe4lT~9tFRkj3LJhNSt4H0F4aYwn0tDzvwwF5f9ZHpuPafPJ3PJzJ3yGqL~uzeGZ~S6JPhwrE9QUvAr7ZfWTfBjpfmDDRN78a1GgZ7blb2oKgVd4uroyBEuRd4U3GE~-w4wgJVvAPkPSBzJNi7e78d0ZM8eMwJOwKTz3FegBuM0cQ62Yfkvg__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 6fa799cfeef91264fdc174ad43b6da3f
    curl -o xeniumranger-1.6.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.xz?Expires=1732335943&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=ayEkVmZd0p~r6heNpeTYnoEJWu1tHnXLLs1ubuLfAGt9FyP92D8qDuYdrlcJQ0Z7ge-cOdQEkBdDLwlLyyTGrSCt4Ol-wNyT0F2AXlssXkt~SuHlsXtSDa3d0y1FlMIo7Ifn74uRew1LZnhiUU~qq8pvCmzi8RMgYnCY706Aqstogr5hPSaCAFmN0mPDiGSWXuPnsJATfoNJrN9GJ6UBjrj7IYJ6dfGj~f-x-Ph7ciuaJdJveM6akUKbvO~39rgz0HRJCPdnEQQ1IEnwaoRR3NIZON5qg1e-JN7iZE-0rIJo5TQMXbfwX3SOTQ4ilqcp1pxyvrFl6~S261GMyFnOcw__"

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Xenium Ranger 1.6.0 highlights

  • Initial release of Xenium Ranger!
  • Resegment Xenium data with customizable nucleus expansion distance and the latest 10x cell segmentation algorithm.
  • Import community-developed nucleus and cell segmentations in multiple popular formats (i.e., Baysor).
  • Selected the wrong gene panel when you started the Xenium Analyzer run? Simply fix the mistake by using relabel.
  • All pipelines produce the same output bundle as Xenium Onboard Analysis v1.6, so they are compatible with the same downstream visualization and analysis softwares (e.g., Xenium Explorer).
  • Backwards compatible with all previous Xenium Onboard Analysis versions.
Release Notes