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Previous Versions

Xenium Ranger 3.0.0 (Sep 4, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.9 GB
    md5sum: 10e28b33f0236a5e62d615dcd921a9b1
    curl -o xeniumranger-3.0.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.gz?Expires=1762370486&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=k91SvzdIrBKV8hKlMVPVifotGM2H9pjVzVqqADOnadvzAa9vyDZklQCRbKvRFLszwlQJdMj2DkeVXMgvrk~Mdt2B34zfcXvYqi21UJtZ0B~glCwLRdLxaNm~M3K7q-PF3RRi74HzhC~3SPGub2FAItdacCK~Jdzg6dcSIpxYJpEbtFNe~xCO1R97hPEi7ga300yC306r9nfLGWgq3PgQAtt6ySsWLP9Da0PcPPOT5sPyXx01Fh-abY0j0GM7qVHnDA3sXiEnJ~rN8oLb8Vw0vEAPTL43BvVutEvmVIcWZvA3NqKRW1KMwj3FIOexR4ZTdkRsINqSycOPORAmkv19Fg__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.7 GB
    md5sum: c31be85a7e19edb8da484c295f3586cf
    curl -o xeniumranger-3.0.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.xz?Expires=1762370486&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=a3PbwQLF-LuMzRHjWUI07C~jp3L08OLriNgv-WzhEF6l9~0yTFYa9DMWZC-J3~vvZqn8z4jaWD4QDHk8JgJH8XiwEIYs4W-8VrgHlOZs-XmV5NAj~-GXZ99Lk-rneRfcz3MITeyIc-cZiYlRptJgcbsg8ZxCfuag9AnzeplyzXe5M6i-VTPMmpthfdebKNQ-WvJvoy~A~Gu2E5CECNvJnDyQiRSed49xo27GmA0VfHr2eDs72N1KUf6OAZU1YeZzfGzmxgDH50hKEF8A520mptiThhS9DvTJ2JsCeO4LxVHurd-wsJMuHJYxbXDwFR3L0fPYX6gvh2NPK16SyH9Haw__"

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Xenium Ranger 3.0.0 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Reanalyzed data gets updated scaled transcript view in Xenium Explorer and analysis summary features introduced in XOA v3.0.
  • New rename subcommand for editing the region and cassette names.
  • Robust to corner cases of importing transcript-assignment data with empty cells.
  • And more - see full release notes.
Release Notes

Xenium Ranger 2.0.1 (Jun 10, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.7 GB
    md5sum: 45d207dc432226dc003a31a287f5ec08
    curl -o xeniumranger-2.0.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.gz?Expires=1762370486&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=aCf~AaP28FobEc2Z0Z3CpBDZczZX6RHpWieK03pU89~RvJiBE26FS4bRmlT1afSUL0iizKudRWH7F4rKa5TbTGrFQXMGAWGTFbG3wRJJiYv-I-hPzxbjHXo4zdrZVV05N1PpH8gqkg2DpoEArOQ1GtrJoz-XLR10jgvfEtinEYt-AsTqg35~xOElZyGf3RaCKiuV8Y-4GYQYP9tE3o5gSzAr-Je0QCRh4yWJOxCUfjm0hXntkYT-QRqGihRbJSLDe2oi3vctk0XTucUcfJen7ofLvZParFqFEe02skG9A07pvRIYfU~RXUrWa-D3MRaxw5IsK67-dPZmXSZbn69HjQ__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.6 GB
    md5sum: 244bdbb3d159ff557a7747c03ec487a7
    curl -o xeniumranger-2.0.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.xz?Expires=1762370486&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=A5g~-Fa7xhn1qQCTUFkRPwXlhzXppG1MCcd~o4e98FNfUVGyvJLImkqXtRyQT99sLq6VFPZxzNXoKHR6cup0g67DXe3jPquLlOUeVFN-KeY1yHUFbmrH8DQtt7q10Y0M0E0ov1u-VDCHmf7oxcQhjLwEZ8c5Dv-usnCBUAKEsNbcqdGxrQOP-VhH3B~2Q8lLcY0F6XwwvMZS8C6UCsp-683J7KZQubqMQ1ckO1ijz8OOj-hVNCAcKwzBLp99Ycs1YQNgRNJ48GEk6nqH9XYDplyjhn1FBfV30cSi1OBkvpFFBI-Z9KDOeXTkuaoZSrw1r4G0gY-6PrV7BNCHw1f9bQ__"

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Xenium Ranger 2.0.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Default nuclear expansion distance is 5 µm.
  • Enables reanalysis with multimodal cell segmentation algorithm.
  • Interrupted runs can be resumed.
Release Notes

Xenium Ranger 1.7.1 (Jan 23, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: 51c373964e46c041e08ba73888657edd
    curl -o xeniumranger-1.7.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.gz?Expires=1762370486&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=F2y6Ai1FQg6bcT4Gl9txaKEKuZC1zoNo~7fhzhHjRIIxuZnOeCgY4DnsF4Eccbor-4MmzFCQZFz2B3RBl3AITi3c0Z7kfAEM2K~bYtFIGdYiOCKyNnMuzhs6yA66JETryhWBMYsT1S6i50YGHs1ldu1xr8oEB0JQbukjLSJR35K6NvVcByWXva2gNix10I-kHlVN-oBhLCrCWWZXjWvE6oWJ-KkIulTaDsYxPjcfzpIk1d~DMjOZbW4WFcrl2mC1eLZ6sGH1ReK808XXzSV8r4dzhlb3Pyg9W8nD-3uehsbDUflXjMgNfdR3B7FUDs8TFCR~Jzp-z9nPN3JT9BF1Ug__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 43e6e4433303aae30973682dc5219f20
    curl -o xeniumranger-1.7.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.xz?Expires=1762370486&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=STKAurHgMCt4xsIFd0Us4oJ9u2j~P22gDzvoE04gaoFypP9~8FyJ8qQ2K8M1qlZtzfhpOo61PNkKqO3~6m86YHnsP2D93QCn-e68L3z4m1CLifLMQ8FmHT8W94RfDnQ1aaDA~saL02WfFZfZ7I87RQQP~WRMxSZxuYKw-ba2GlgJHMn1AiGToptcClj9D8jy5AqqQhjkeH2K-5-lcqzlbCe9JCjymc4OtOHavoirQeH4uEzcg6Gi7sKAo2wiFTRAdfeIaAquogR9tEMuPb6lV1mMNa9~uO05WxQLGuqQAUudivAqsRULkntWuPUF23Lblod8phGeL2fx4fHhAnZblw__"

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Xenium Ranger 1.7.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to latest version.
  • Image-based import-segmentation now compatible with segmentation masks.
  • Improved memory usage in the import-segmentation pipeline.
Release Notes

Xenium Ranger 1.6.0 (Aug 17, 2023)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: ebd970ceafc057668b9e664df310a5fb
    curl -o xeniumranger-1.6.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.gz?Expires=1762370486&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=O~RLfFziYTVQm4odFCbS~FI98q4FlXuIurtkARfltl1CI3GGkH4EW-abHd3k3y~mgsyCBc~a90wvUtj08Bt5IEnI2PH9s~lyrCEDOArOGqltKvcKdPffO8zlo~1NO9ZS0wU~8cx-FxG6fd-NIDUdarSYPSxQV-qBbRChDSE~2qLXu3-8R59YJXhC69oevTl6j0bJjlWNr8DXRMMg2UdH95nJjH-TULm7CKkTu6BnKat4GycSuCAqFRxoZhXE1Gx-ki4HGjQrQ-FRqLE6RdrbsaI-EzBRtwSp5TpZKPbx125hVPj6ynSioDprbB1pFAHvtnuFQurZYW6bLf0W7bL7Jw__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 6fa799cfeef91264fdc174ad43b6da3f
    curl -o xeniumranger-1.6.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.xz?Expires=1762370486&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=CdFtTkeJQjhhPlQ2EMVf33h2eNuFV~7dtgd7dp7ueoXydyLSW9~6d5goJ5r3Heu9IhSHSnznELRdbMez1qbOWFTaWi6aJRjpk~jzbcQoeDu13DmfMPQesGhUNGbbHRmqwRjihewzkIgh20FTILrVvNu7D3rAYOdBNMsX3Fdl9rVyhGNys0mwYsRngQ3pQbLezHq6OpcrBY022tL2vNwgYVK7-LCXUYc~~mTg2h9De3ykllcSI4yuZCJIkxultZdfLaDJivkj8VNFSMZd7myte8NGllT7~CLX4~hoOauGVIpjWidt115VPgAf5WfbAM0k~XVqmC4a0bu7Zg5ww8aK8g__"

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Xenium Ranger 1.6.0 highlights

  • Initial release of Xenium Ranger!
  • Resegment Xenium data with customizable nucleus expansion distance and the latest 10x cell segmentation algorithm.
  • Import community-developed nucleus and cell segmentations in multiple popular formats (i.e., Baysor).
  • Selected the wrong gene panel when you started the Xenium Analyzer run? Simply fix the mistake by using relabel.
  • All pipelines produce the same output bundle as Xenium Onboard Analysis v1.6, so they are compatible with the same downstream visualization and analysis softwares (e.g., Xenium Explorer).
  • Backwards compatible with all previous Xenium Onboard Analysis versions.
Release Notes