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Previous Versions

Xenium Ranger 3.0.0 (Sep 4, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.9 GB
    md5sum: 10e28b33f0236a5e62d615dcd921a9b1
    curl -o xeniumranger-3.0.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.gz?Expires=1757884095&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=cFinCgMFYYl7u2F~osfMyUTfI6ialIqckYcK0xJRTFH8pgxl2FnmFiXz2fdYHZT9OkcxVqpyLeHkMJCmusnRFMvHPnHIrs~2JJKbWg6hTdxk8u9qFQ~7Q4IBQinSwwx5IDhPu3I0M7jhwW5WaYOhLiIbZ0BD7qixz2J6AlXcRM32s5RVuLB-ux83nb3kbjs~nnOi3EpKiXWPaQP--qmzl9q4zFOFiJ19P8WCKDzRoSaDm6Eq0Tmu~eybF3FNARDV6LBYCzDWZoMPXHQQCIfhi5q7DJpFoFvdF3USuuFz1~Qkgi-CEnFFnLGBwQEshVi3kJqGKn-XM~US7xp5M8DI6A__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.7 GB
    md5sum: c31be85a7e19edb8da484c295f3586cf
    curl -o xeniumranger-3.0.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.xz?Expires=1757884095&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=cDFYeznxHYyeFtG4ZYYYc7xRcK0FSztaqhgIFH5eUV4PgHRPntCLYzFtcP8resLbpa1mo--MHzNaH85DMEyC~5~eNWo7vsva3EWhsRQ5D2hvF3a4NoJqsOw-GFN1ia2pOBl~A9acTTlfxAKig9FA07J8hC0o4MDC4v4v0rYnzQJmU66rM7Fpcp729RIQiUC3HArdzRBZ01mPwNWsaguEjyikDOBkiP6NCNMcxIwR2xiVouUbQfE00hE77KJGkZrny35EDQYytlU04AbSXdiXCrEop8ZDbI6u~dYeUoaxITq1SVvlsRnzHblY1EIQIwvg9fdd4yx7wm6IGkYMG2Wudw__"

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Xenium Ranger 3.0.0 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Reanalyzed data gets updated scaled transcript view in Xenium Explorer and analysis summary features introduced in XOA v3.0.
  • New rename subcommand for editing the region and cassette names.
  • Robust to corner cases of importing transcript-assignment data with empty cells.
  • And more - see full release notes.
Release Notes

Xenium Ranger 2.0.1 (Jun 10, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.7 GB
    md5sum: 45d207dc432226dc003a31a287f5ec08
    curl -o xeniumranger-2.0.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.gz?Expires=1757884095&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=HipIO5-WFab-FS-ymcEAOyJb1g~sNH0PblEMf2Qja7bu4-dq6NcErSRQesihxQenE~sm1g~fdZTWtoqONhW8wvAeGljta497mGYdML4hYtE0Jvzt3zOBhkMHorbejSgAg8if4mrK8DEuP3uS-mCtlx~CLPeE2USUeB3WzRDNHzQb3nTe-LOzlnOWvzBfvUN~Igun-H64wBNa7G0m9qTfzkzLTsuzbsdeaKhKHtY-6SirWcGO6m9kl2YR-y5oq3DrXgsSDNKGsE9KObeLOPjX0K98dH5hFY34DHdJ7SpXvwoEPejc3hWxB2DoFTCxMRO~CH1SnTA2P9f6nTBf2Z2Y~w__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.6 GB
    md5sum: 244bdbb3d159ff557a7747c03ec487a7
    curl -o xeniumranger-2.0.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.xz?Expires=1757884095&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Ey3tv~CDkOJlDlWRZDzh49awISwNbvZplr3HEvLp6Biowz6C0fNDK42mEShsHARK4WX9QPHAsQKqecdMpXDXkuLu7YZC04ANtl9zl4XRG0EZEGs~RDSBRjpoFyCWT6lsNNe91nHAuLD5uaYfsi6kvn8NrWPTdWZJoVNranrLDX3iOFoTesiZQFfK4H1UUl90wQuA4pFK5PhS8DQzH9BYzow0~6sAlABej98qPRqIXOB8LNOTi6mwEq870oRWGp4xwy2V7XYmAOSTe4nJRR3UF0T11v1kJorzbiAMVoER54lfDtl9ylBf7-8f8NP5oEGjc6gpsEkoYHpAUjCZ~QUYbg__"

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Xenium Ranger 2.0.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Default nuclear expansion distance is 5 µm.
  • Enables reanalysis with multimodal cell segmentation algorithm.
  • Interrupted runs can be resumed.
Release Notes

Xenium Ranger 1.7.1 (Jan 23, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: 51c373964e46c041e08ba73888657edd
    curl -o xeniumranger-1.7.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.gz?Expires=1757884095&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=fRnOwihsBED7jMgrNz8yONrE77jZ9tVpm0OvN15CsgWKUXYPrP95-yaHlImHMwPszR1~Jtcal4yutB9ySO34RF7PXU~71Ukh1QxJOB6YFcQPChhMfRo-AQ0pvcibAw72c-yt~gYvpETbduQlyJArdbocHGpqwr5mZ3M-aipeXhxs53sYArcnlRr3IH7dIZSaLOl2Wx3A1SXxgYmApKh8yAQXOJupEcPPH6XuogebJNPy6zhbfzI8lMQMEY8g0eJw6dqVLR7c03CR8TR5P9ubSD7ssHA2RGNHOTyTEtAUz3HEhrY76MDgNnNSMf9w7zD-xEV38fOR5aH7joZjQHv9VA__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 43e6e4433303aae30973682dc5219f20
    curl -o xeniumranger-1.7.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.xz?Expires=1757884095&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=l0dpu8x6XmDkfPOvoQEqod2AabLPDUOPUQKo7jjPEPQc0g6XuxEpcmeCkgj6-CJyarNELZNtyWyJr0dNd~-43MoTbBAhkfV7up5S1Wrl8roVuLWDD2QiQPp-RIn5dCnCePVxGD7BpY1K74iHGy3znsqd~OcJHXtmh54vlvycOelvHtJxtuWzUbQN~N2WNUlwXh3seK7Zdrp1WAEdUqKoAvyJn~H0HEvVSYTQneKF8rzXfa6gnWxRFKIjjj~TwSTAgwu1m7PHMiHDAnzUc~c-iYitu4BtTXjMRDLTOl3eSQT5LhLqIjCFVTI57PzEnHzJkotedlcPxmofxi39LSOI7Q__"

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Xenium Ranger 1.7.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to latest version.
  • Image-based import-segmentation now compatible with segmentation masks.
  • Improved memory usage in the import-segmentation pipeline.
Release Notes

Xenium Ranger 1.6.0 (Aug 17, 2023)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: ebd970ceafc057668b9e664df310a5fb
    curl -o xeniumranger-1.6.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.gz?Expires=1757884095&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=EomlamSfAhqiEajmTtoRoM70plrjAWK7ku2WGXbaCnA--Fg6yJckAcsAeHo-3KyNHYuHevUJQf-vs7-eTLKXeQ~lTVSMplNQKwuPNQJmpIhyZcebwtqh6mgX~ZKVwo-K0K5mFlI1ShvjD2sUSpyQNiA5~W95vEUENjQigTMmnDaCq6Tb5lPLJwP3jH-ntDP733qY9S3YSgSQ~nEbx1PWAJKlEumgHhAI4psiuB54w-GIHmNEkxl8ZzJvS810z8jhorahnOSelrUbSCf0CscolSC9kJUqohZ-qfDeMy~S7MTb~KOR4qpI2n~n6sf-HJFTOKkVOfHJ-3C90ebzEte79w__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 6fa799cfeef91264fdc174ad43b6da3f
    curl -o xeniumranger-1.6.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.xz?Expires=1757884095&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=mRZco3qxm4LCPK9GCZMv2GlVOICT5iJ6H-LGkOpTOqKcYhjtZVh7HC8dK-nx6PeK5Vp8np7YFT06HdOdiVTVpV7RSwh6Nc46EeusPYJgS2zbO4QJ~rH72jcnmhB36Z9e-GOKNv61A2AcsdSKxC3NnRCiRo3nz5fh7HuMacjP2vYTpulmAuBobhBEnvcEVUNwUyQGAMgNaF6NRd65KjaINDwH1KPWmJvHL3d07l7Qn3HNTJGh~7~qru2BsHCSYKbmv997RM8ERvFpWX3dQnGvN5CiWEa2zRpjAqvpn5z~1-16AgUG291zQ4nm7DRUZkskktSf1SYqgjY6S5Aku0Bymw__"

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Xenium Ranger 1.6.0 highlights

  • Initial release of Xenium Ranger!
  • Resegment Xenium data with customizable nucleus expansion distance and the latest 10x cell segmentation algorithm.
  • Import community-developed nucleus and cell segmentations in multiple popular formats (i.e., Baysor).
  • Selected the wrong gene panel when you started the Xenium Analyzer run? Simply fix the mistake by using relabel.
  • All pipelines produce the same output bundle as Xenium Onboard Analysis v1.6, so they are compatible with the same downstream visualization and analysis softwares (e.g., Xenium Explorer).
  • Backwards compatible with all previous Xenium Onboard Analysis versions.
Release Notes