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Previous Versions

Xenium Ranger 3.0.0 (Sep 4, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.9 GB
    md5sum: 10e28b33f0236a5e62d615dcd921a9b1
    curl -o xeniumranger-3.0.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.gz?Expires=1750063081&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Bvfyi2RU8G6D6GsxAhItGJXG033S7ObGRXw-XXYl8Vc95FDn1XTejefttTqj9j8oEjocYgaFOA6aITFR494R54vMI-rJCCUQSN-LthPWlWW57xqAd5Schs9EDR65dRub9QIwHrYMZrli1KcFJQ~RIufU3UtohR1jwPjTZwV0hnbgHgmPQpNaU4PuQV03ImpqUhoWCjPJQU~LFdWc3rC-dGjSKanp0lo1a95D5QdhHSUYi8UiAnYSNZp7OzShafrh8BAjEpBVa7XgQEgeBegLhgTSsUINfmKPogK4trIv9xabGhsncJbQKxCvz5Zy3~rKz7xZgXPkQwULJjHcLbCx2Q__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.7 GB
    md5sum: c31be85a7e19edb8da484c295f3586cf
    curl -o xeniumranger-3.0.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.xz?Expires=1750063081&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=ZAscnZ9jFYi2LKIYdjcUY~6fY7s9WBK4c9D65N-Z9N~p7jBP7PFxeflTqpRvqdhryDetzOyP1jeHrq1nJrcb0W43GXNW9CSRU-Hvax7lMFo1MMkl03Azbkaakapljqlu-HOXMJUc0-PTyUfeEz2UTY0Thc6iYrYp2bqkR6QhENGFkcNskT16FMaCdkL5zTj81AsA65yYI47Jtb-k~iccDzfrTxcI2cHYBGR8rsSqVCllGk83FAmuRRwcDUZ0taDXgbLQ81n1v3zUovh6QCuAMGFam2jmg38IzBs~VqhQ4FWrCh0OuK1A3RSkWA85FHqSJkroWldnSufW9bCUSVk05g__"

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Xenium Ranger 3.0.0 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Reanalyzed data gets updated scaled transcript view in Xenium Explorer and analysis summary features introduced in XOA v3.0.
  • New rename subcommand for editing the region and cassette names.
  • Robust to corner cases of importing transcript-assignment data with empty cells.
  • And more - see full release notes.
Release Notes

Xenium Ranger 2.0.1 (Jun 10, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.7 GB
    md5sum: 45d207dc432226dc003a31a287f5ec08
    curl -o xeniumranger-2.0.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.gz?Expires=1750063081&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=SeGb3YoAA5mzLvQPzcWFyyrOX3TKqL4xo85ByhrgVscOrg8Zm3dNbvkk7A-PXhNGxXaHhh2xCGCHZZPekUl1tH2GHEkKr4Y8tiQt3ExJcqePjXUyZGoJovBsJnLBgAceteB1bOQ1mjWEqutfN5LwNH4Wmo4mUOECLnR1zZvjztc80gSYFmj8YT2JqnwH1InitjI5GmuT943fillgMtCKerpHlFSWV2Ukkaajn~O0aFjJtvLAMme6YCG1tUTXvWLLI29mchIOtN3WC3t04ZTyMJrseYtgSVxnLq7ZXzY0ADdFMrCN76AI53NlLawHzgqAORKjVhJkUSOnSzBydDZslQ__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.6 GB
    md5sum: 244bdbb3d159ff557a7747c03ec487a7
    curl -o xeniumranger-2.0.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.xz?Expires=1750063081&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=LFTLBYgECFfjCe~c8~tK2Yd91oYuzMLQcA1mYhnsmEEPd1hVrxJY-JWU7CNzoxhGx6Gk~kusn~k7-xIbSb~pz9KKwuw~mIgc1oevKldDAezg5aYDG~nq36p1x72YawDQXdVPvv7ojmqC6RmgKM8-Urn46g08nL9rxwtOc5Q00uIMP-jzwP5uJR7X-J7X05AF~G-izy0vRfX9gGSYnA8FcGR-SlV839kX5GlXm5yiRJiZkB3ogN5neIsLyFFtjkY2vOv1mPoHR3zbwGD5TxLWi54qtyD7WzwGmFz1H5V81a44-JMydVqlmwbRHmB8KJ9DjQURqjJB4eUjuhJOnjaWng__"

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Xenium Ranger 2.0.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Default nuclear expansion distance is 5 µm.
  • Enables reanalysis with multimodal cell segmentation algorithm.
  • Interrupted runs can be resumed.
Release Notes

Xenium Ranger 1.7.1 (Jan 23, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: 51c373964e46c041e08ba73888657edd
    curl -o xeniumranger-1.7.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.gz?Expires=1750063081&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=ckTMWZzxaUjAFbjKWknlZOs7itXeuOzfKkZnSci8y~Pb~BRU9FJ55It8cH1Q1-azsQ4H9ffHEd34JlqSfmtjK5SXTiU2se89GXAp~RoDyj16RbAlC0ixHh1qcjR3C6vdFNjPQ7sfkjobfLcs9cZdHeGrmz~mS4fpSXKZq1xjb4MMNFVj1dZ~wlHvr183wi0TugAWBCpeqXsd2NMUcqyqqpv8DbXLGSFz~ZxHSjW7mJCcr7qaex77mVjUYB8La55TO8wIguIzI-zmQKZMlSWnFcFGPHTNBcprW1BjL0pDiuzesEpg~~B1j3bPDAzVct7299dr8JQqFkPSawFt~HwhQg__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 43e6e4433303aae30973682dc5219f20
    curl -o xeniumranger-1.7.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.xz?Expires=1750063081&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=N0zcUQSL4XBzWv8K-PutING~q8Po8A7SHF8RsuVTKbLPIi382b7JMll22vpeaJBCyw~k3GH0FA-mxLoem9zeZuDonHCJQL1J-~7m1WdEu4qXnxLigat0TN~Z2H8oTb0gB1wgBnCtiIPpEo8Ap35MWDACp84cgZypTtU2YfYUgcaK1ZTveQAZKolt--PA0q6pOc2UUTCTblp9u3B5MYVLN71TZ-~4jLPnnVAfwxiJwJaDNOY1Ay~7mxjm6fc83MEech5Fz5eHEvtFQ1so~OgYAL4eAH6H53Few61Z4frdSuL~RNWoE1ExxAKK0KPPlXBj04aXGtmlK92uZemkuJuo0g__"

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Xenium Ranger 1.7.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to latest version.
  • Image-based import-segmentation now compatible with segmentation masks.
  • Improved memory usage in the import-segmentation pipeline.
Release Notes

Xenium Ranger 1.6.0 (Aug 17, 2023)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: ebd970ceafc057668b9e664df310a5fb
    curl -o xeniumranger-1.6.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.gz?Expires=1750063081&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=ZkziuBGjx5~tSFJg64TxLmaSerQSBdZ-sSWQR6mU9GK1J~F9p0ppdcASvuXVlzQe51mBLyMB-AAMwaDP-S5fIUpbVQJOuTuSHMenwizGTS6h5E8-yrxzgbNaHrxzdRKyFjXcyXBCSLnKydqvU~DujGCogGUp~~gqdmgowkJ7JheN1qozdHSyWUdDVHaAxPPHPfz~O-TlT~8eF0-RmGUF7wTrGvf~2c0uaGqx3ZuA~4uu01e1IZwGTffF8A~qnzeZbsp1bFv-9ku0BZoOnShggHrt1djH0FgZ18Xu4~4x7JsHiwU-1qthJndhPyCuRDEG~dwBLn6~57aQ0Z~Xtj0dcA__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 6fa799cfeef91264fdc174ad43b6da3f
    curl -o xeniumranger-1.6.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.xz?Expires=1750063081&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=O12n1lTkHwDNO-n-gddSYoKe~4ivvmkNAW4wI9gEXKjSoMYh3WtwYb2vC1dkp1Dpslt3Penon1cRHZiuN5PdaLOdKig-WW6WEom~ZsuTOiv5k1d~n643gAH9MiLf5tc92s8waOeFR26cpkCqydQKG1yyWwLYuzFUqHP75UJIzCEQ6PvQOJfTNfKq6jUEgdScNRO19DleY8hZP9PJsyNk4GYSaDVmfhZcofOOmd8qjAbzh5YzCHICKlyi8QYNLAORQjlxFl5SnY2hlOznDf3CthG~FQvAi4inBpQvORyJIqmDhqGHFKIGoIn5Dk5WNLNjU4e3YtFsrYBkOTBdSjcYSA__"

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Xenium Ranger 1.6.0 highlights

  • Initial release of Xenium Ranger!
  • Resegment Xenium data with customizable nucleus expansion distance and the latest 10x cell segmentation algorithm.
  • Import community-developed nucleus and cell segmentations in multiple popular formats (i.e., Baysor).
  • Selected the wrong gene panel when you started the Xenium Analyzer run? Simply fix the mistake by using relabel.
  • All pipelines produce the same output bundle as Xenium Onboard Analysis v1.6, so they are compatible with the same downstream visualization and analysis softwares (e.g., Xenium Explorer).
  • Backwards compatible with all previous Xenium Onboard Analysis versions.
Release Notes