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Previous Versions

Xenium Ranger 3.0.0 (Sep 4, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.9 GB
    md5sum: 10e28b33f0236a5e62d615dcd921a9b1
    curl -o xeniumranger-3.0.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.gz?Expires=1765405535&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=i1JyeDEC2qU4DFZfNPcFQb~9IrKo~ZAz8q309FLBd8eeybXJ7XaGz-mYVJiM4CIMTEzdZ9RvSovQLKauyjqd7BnEvxySTVNQmrn8m2bxK6RJgU1NCKcWnGn1S~zlXS09ATYIWG4WH1kF78dOztmaQeTP4tQZHNXI7PyewYJKuWwYZjUo1W3MhyRPG8CSft0rDaVQEFM55-jThKjyZzwgY3pp4Yn8Y30tdicG~qtDz4xBDMqZcTEAO5lDUugVyFmKIBb1jm1RRsD6tlIRw00zxmxt5tJuKpf3DdINYUkvItgbsiK~pVFcT54b1Sa4tYRetLbwwJFJJMWP0az7Z1IaoA__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.7 GB
    md5sum: c31be85a7e19edb8da484c295f3586cf
    curl -o xeniumranger-3.0.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.xz?Expires=1765405535&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=RR~6360ehMv~oa-dmbNR3eVJSyDfD9OMws~1H6mspsQRw-~waDrMqMYBJxyA4AnFx8XVoxpnv0d7zxzzzWiAaEV-pAFaLwUejw0smiPU2sxheSNHAUBMqTSkD6dF5eGkvgQmLXbUi4e2c3jhtOwcEXRqVcsu9kGjtGwSPyoFI~HfMEz-yOnztcbKtvVy4X6FQgXBX0yHz5SpiaNlKdRw35CivcN-AzKA03fQczi7hPBJzHomnZiR9V72hAJ8IRncWKaex3CvLMokQh4jo~v10BvhYUvv8MsB4VyB3gTVSiT5o2pZ7QK9DZlJ5uzUgWTCU9pmEN84Aa9wv51ztsaiLA__"

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Xenium Ranger 3.0.0 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Reanalyzed data gets updated scaled transcript view in Xenium Explorer and analysis summary features introduced in XOA v3.0.
  • New rename subcommand for editing the region and cassette names.
  • Robust to corner cases of importing transcript-assignment data with empty cells.
  • And more - see full release notes.
Release Notes

Xenium Ranger 2.0.1 (Jun 10, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.7 GB
    md5sum: 45d207dc432226dc003a31a287f5ec08
    curl -o xeniumranger-2.0.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.gz?Expires=1765405535&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=apGqgKAUiX7m6pcd-Qk3YQwuGI8RWPVhCnRu72xE9-binGqDkUhfSzuE61NS~B2LpU84iGBqIwmDapHTZH5kIxUJdm4kRCCo5wF~dz~KGmNJI3OcCuItGfWySUiWnu437QJLwKKttztd5BHQrWtSMFwteQMwRqunpKiCqLUsf4O69zutL~tCMtytJLpNn6DEOrsHofq9Kd5rGrENFvG3Rk4Da3AnXw~64wov0lBvRT8zbPwVtZES6gdlVSW1Oqv4ZiJOGc-T-eHq2wgyjadQnYY2jFLlGMDz3b3BMe5Gw6yI2mORzqwD6~SfJsEqFFebF-kjntm8W7-loBz4U3VKCg__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.6 GB
    md5sum: 244bdbb3d159ff557a7747c03ec487a7
    curl -o xeniumranger-2.0.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.xz?Expires=1765405535&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=XF5cq59IH7Tt3UWcH-Kj7HQrcE8DckjihEX~fi47IZ4oglm5~ygeqeNAP3Sqfg5s4WJU5s2mkKZ5FtQJGPq073LpuCF7RVkEovBHMja~FrIZ34aiVLZGhtzBk4w0dHpVgBdyA8ImZuYtIgiIyD9dnIsLQ9tC4CcQoce~HFFBz7~iqs06z-o7XeKCoJ0xYU6px8SlUh7~RNw1xPWrS5UdCmU1aDoARoqmw-xJNHlT97SO7iJAG2cDme6pXqrQ~qrUHRz~cHWgL4ryAUzlNf7CN761AFWU3fCt~v3AgrZr1SW6VqPy~GQbSsxd~XXEmk2sKzyJhwfrJuVqu50N8xDxXg__"

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Xenium Ranger 2.0.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Default nuclear expansion distance is 5 µm.
  • Enables reanalysis with multimodal cell segmentation algorithm.
  • Interrupted runs can be resumed.
Release Notes

Xenium Ranger 1.7.1 (Jan 23, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: 51c373964e46c041e08ba73888657edd
    curl -o xeniumranger-1.7.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.gz?Expires=1765405535&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=HMNXII6u~MGKbwwR1nrA4awPxrtG5vKd9cZV6ZeaStcfgr1HlPCVKsynELjKJCe6cvYGeX5X8n0WrHqJHvHLdZugTLKPrlWFwNqkwCydvTBdq5m7Juz2nQ17QhGwhW0qWwl-bdBRQdg7zJ~GF4MsoNTA8XPgdKiyGEkZTErvOdpYLMRWpcyyaplTViI6aTWrCchCakUMJBVruKbWGAmqVNr2z0OrE6cA1Om6m-bR2VlHxcMDA4lSgID8UU5JOhpYbDGe3w5xP~mKihBAFbCiCIgvaMdsC4OQSXrr7pNmfWqMLyAT~f5zaT3dVLlwvH7ENZdluS5Gc1fxONMQDRgQQg__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 43e6e4433303aae30973682dc5219f20
    curl -o xeniumranger-1.7.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.xz?Expires=1765405535&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=EjQ7AwBjciwLmGR6H5T0OwMOLEwSBfvmXZKaUmDPdBTtY7Oo8enlVMYwl3C7~pgPqfcsrGyozvUNEmblUfkgcceWCC9Aja6ec9kQ4Eakipd9gfXMV7Mf70if-j~eh1pIM3li139zuKwA~9to~TVY8YgUdw-N9QB32wrRLVVl4W1K2C7pNx2HsahEIorDk6I5SBffbglmnaF-6hjlTmQTWGwS3HQpNmJkerqOwF6IBNFFnq2YNkSJoqqbUj-h8DO8MJQQnfT54sgUZN~dejCDEe0LK5YG0bJStkrnZCPRsL680U7KFECIHmqED-RYhQniU62o3jPPUFWA5xCnlERGXA__"

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Xenium Ranger 1.7.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to latest version.
  • Image-based import-segmentation now compatible with segmentation masks.
  • Improved memory usage in the import-segmentation pipeline.
Release Notes

Xenium Ranger 1.6.0 (Aug 17, 2023)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: ebd970ceafc057668b9e664df310a5fb
    curl -o xeniumranger-1.6.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.gz?Expires=1765405535&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=NIF1T8uRbuspsZ2Oy1S6AkfyNCD-QpKdrS7vsvfY2tiK4aSOa9Vp7gfVZw59pJ5W6vLmA4Nt75xbCSLeKj2cu~cYxThQmcA9O--0YBTsWZqRP6Muyn20Z2OH7Rjtiui3JufPwP9ds31W4SRuj001am8TqGzz9fSpHxvRyCC36dBJ1ZWo7ON9LsL6l85W9QkH3iaD0oiwFgEV4nMLaek3xN~ot7H9rGkQLwasykStEg2lQlXoos06SO~698lH4CFr6U~~VCf03kRbqMX0uibbMc5cDTdZtyfoNbN8PzIALJ8fBuFQTD6eCsZcd9u5He0zf25pY4AVErnMeIaIJERViA__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 6fa799cfeef91264fdc174ad43b6da3f
    curl -o xeniumranger-1.6.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.xz?Expires=1765405535&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=PmXq4-KSOeQglopZdQuUl68o3g6sDwgrisuEpKT34huyTs056wifvyi0k3K0DXmADCp0rX7BGnDVKywVRoYiorPgGwhBn2OGQy6bQI6ZfZZ~3WlUtkZMKjBVSdfV6vhSLlfwkYyS0lPufPJ5pJqdVClVbaP3rpk8DWT2VWQgWZ~VBzUUDb4FZDhoVPk2qs85zDO8yx6pGyhySdvjul3QT1zjeBXS3dU-ouodZ1WhcKdvpMtt6HFEcE4AqDHLq7AGTsBY7fsA3UnwU1lYVqTAKTZsxdTxce0WlHlHTVANDADp~Ybg0BOOcTvEjSdx5-Jx-H0lMfR7JgobVwW5cm5M7Q__"

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Xenium Ranger 1.6.0 highlights

  • Initial release of Xenium Ranger!
  • Resegment Xenium data with customizable nucleus expansion distance and the latest 10x cell segmentation algorithm.
  • Import community-developed nucleus and cell segmentations in multiple popular formats (i.e., Baysor).
  • Selected the wrong gene panel when you started the Xenium Analyzer run? Simply fix the mistake by using relabel.
  • All pipelines produce the same output bundle as Xenium Onboard Analysis v1.6, so they are compatible with the same downstream visualization and analysis softwares (e.g., Xenium Explorer).
  • Backwards compatible with all previous Xenium Onboard Analysis versions.
Release Notes