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Previous Versions

Xenium Ranger 3.0.0 (Sep 4, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.9 GB
    md5sum: 10e28b33f0236a5e62d615dcd921a9b1
    curl -o xeniumranger-3.0.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.gz?Expires=1757882626&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=PXZRU-jRz5sLvywT~ZzOImlgVP9mmKXujPVa4dijxBPaB67POys7f3mtAnB3~UnXg1IHP04YYfAb~pbg8BEefo12xqByTFugGC2ldRRvJy7DozCXt-xJBh9c8m-FJDgsaSUYzWmrp0lWPi9o8KvEDLuYKQ5NgLQnOBhp-5lmCdapd57Dw8YZDMARdlkCEoRQmodRQne1Byf2pIutQuwtqLMzj12kdE8hfgC-2oGyL11~RpX7kB38JeQMyVFzhMHGV1sHBRRoHOeZsiXHkftOh7m3i8X15n0QTnggusw4HfRp-nz5vLzwCbRdH-3-zy1xC0k4K~aTzlgXpbYQ-jLqpw__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.7 GB
    md5sum: c31be85a7e19edb8da484c295f3586cf
    curl -o xeniumranger-3.0.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.xz?Expires=1757882626&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=J08Akepik22HSMSZhQEQ~pw2bThqlACUx6xN71kenwrOIxfY4SevdSNANktLmRtsagFia22339XSzkFQhpvYyir257xWMBCW8Y04iLeoEYhA7a8MQjXAUkUjKqTwQtqfPSODEtF2gKO1CylBpY4rkeVML5qzGSYPVG0wQNMoke0US7Sh2Owj3xNpCfWAyYFmqbzCB-FMuQq4RsCCLQ8XQIaOi5EQ5PVHjEwxo6I8Yr3-bk8zgKXo33Ha8vFPWcXv1aFGt0Adzco0YafX7NGyiSHOGC4uUG~vHrXFkEn94h0y0fSNG7IrEdMp9MLFigxPQxcQ1U0vR-KFfztbb5mcng__"

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Xenium Ranger 3.0.0 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Reanalyzed data gets updated scaled transcript view in Xenium Explorer and analysis summary features introduced in XOA v3.0.
  • New rename subcommand for editing the region and cassette names.
  • Robust to corner cases of importing transcript-assignment data with empty cells.
  • And more - see full release notes.
Release Notes

Xenium Ranger 2.0.1 (Jun 10, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.7 GB
    md5sum: 45d207dc432226dc003a31a287f5ec08
    curl -o xeniumranger-2.0.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.gz?Expires=1757882626&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=MNv21v-swC4~JwqhJaKEdEBhVVo2vo65brMqltiEY5mQ4CpAYgCfzJ9dLisytyNXCFV05l~sDEdGkdEfhocRqfHHcQFC-f~Tql0ptXi2-npOx8TaDiuFuG-e5grAvXDMx2mZF7T5tAAetcwHqyyHZdegr6PoZ6biNo41xmtE4iAAbC~M14PtUN-88tokpSzbII3ezVsL523e3Fx14d~Kp1JlFuBrJxSwXV6fxIQ5Yi~LLiWysgNKI0ksdrk-HWBp4w0FSO2z7eyMEAiCEetDO5exouUtc2ZVd0RZttvSjHqz1kYQUy1bTud0w~JysEQZrT8I9xmv-zJwzszwWvdP1w__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.6 GB
    md5sum: 244bdbb3d159ff557a7747c03ec487a7
    curl -o xeniumranger-2.0.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.xz?Expires=1757882626&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=FaIHb7JfANmtl1aofj9YUg3S9VavTM71puKPVM~ZHqhdtZCr7nTVG2OIVC47PDxfK9CqOR871GDh0cezefBwMBMo6~1Bur1F-YKbMV0~NCAPDm-qlpO2f03v4j4KJ1g5-Q51dTgzjt4dcGdoVs-QOX3NfS-lYIpgPVNQcJ5gURZ8MIuoctUw0tWLoYcO7RxkmF248rb1n7ePnsH62KXo0ViUBMPK7R3UHnpC0swPEZ6gKWyG149mZdxewxRZ6RBgUP9h7hPDt9TjNV~JHD8d2SxvY4-oo1FAe--gJ2i36yi1U3L0PnpnQJ~Z1S8uYSbPQJTCzI8a4QNkNhqOSFu5~w__"

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Xenium Ranger 2.0.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Default nuclear expansion distance is 5 µm.
  • Enables reanalysis with multimodal cell segmentation algorithm.
  • Interrupted runs can be resumed.
Release Notes

Xenium Ranger 1.7.1 (Jan 23, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: 51c373964e46c041e08ba73888657edd
    curl -o xeniumranger-1.7.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.gz?Expires=1757882626&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=bnGvZ-OQjvGqfVrZJziiXVoS9pU0FbcO7x-d32CMaLdyJLpm5cSRDihu~7UbFn368NbhTQA3BAyWfB74CEee0qM6gccKBR6a6CI-C2MiLyA1UeWWAWMxID77uQZsRyOIUtXSKKQCWHwiA~y4kcesAsD-YzRL9lSWcQhnXeuxcixUI3yPmDLIleB-9ab3~0eIL4wVWXEAS7xAjbdN4H2QsPvs9fHTGnDKHim2jjkcuzEnIPlKzHliXeR-t~hHwxaSrkmbGn7U6vqWD18CEi5nJx5fUsgb9GRFbjJrV2P9QVyxsQ6eB78-UrLentYpmFE4853Q8t8vAIM4C-MyfwoRXw__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 43e6e4433303aae30973682dc5219f20
    curl -o xeniumranger-1.7.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.xz?Expires=1757882626&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Uu3wks8FAjyp~G9pfMYJExl~7EOicuv1GyrkJ2cDeOF4BKCrOm8-eJ6Jgdo0FY904FdX4yNDoVc6o1iTApFkq4IcswTfbKJ-MRTkAnnS6YsIGR~ll13MCWQnXw39oreiApNe2WyGXrhjMCuAELkQdPrMdiGmQq4tA3o~enYGU-lkmqe38~ongNkAuRIJ~U1UEQ4TcB4OBDWuxw-G5iTENKTRfU0lzKXvRgdtOob8jPVshyKOpOEMICXPErrrmWWB7mCR9lFAsmC8MTUnStuGrEObM5TxfZRKvhTOmU3MA8JvcAwcxBRO4Iqf2nm9gj9ZpK61n2ckJBwWDF56gHFrKg__"

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Xenium Ranger 1.7.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to latest version.
  • Image-based import-segmentation now compatible with segmentation masks.
  • Improved memory usage in the import-segmentation pipeline.
Release Notes

Xenium Ranger 1.6.0 (Aug 17, 2023)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: ebd970ceafc057668b9e664df310a5fb
    curl -o xeniumranger-1.6.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.gz?Expires=1757882626&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=HSBLkNjR4GLFC5ua7si77585rhTAJp7n9pmnJSewOeNXZVDv9ofzNED2yNwRd9CbWeK~u9A4YLU0iDMrlnEiwM6DbGt8WdU-X~w2mha-iN4SU3W4FD2jd7Fc7KAHWX6ZTzNpnj1YBWJjnPQJzOiHhnTYfhQaVW-45S4dlRtOOcIlbyOBPbP1~LJiLTwoz6fDz-x93shiDS3vVuvKHXXLTiNmBHPWF2SfRX8nZwGjYPL3kzd4JTZqcEmKR299ck3vUQ275sZix1ZNGL8GuGKF3v567JOA3WAR0jtme~0KdWr-TJ5RTL8eatUUHprJBjIDxqQRchaND7gg5~ds60YEBA__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 6fa799cfeef91264fdc174ad43b6da3f
    curl -o xeniumranger-1.6.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.xz?Expires=1757882626&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=RHL13eiptNqoXelgfh5wh4hh7pEu~bpKZJ93Y4tB1j8OWX5y6HsjNlTCMCLykzS2BDbYdbAlM5hrhtGQdahv-y4hGDjdwZpkSBpaYHh3B7VOGbbQw3Kk9VrFbAUaVSMWlnOqMV1ZUhD6WwHtDhT7uoXd7DjzbyKswJGTsX7PWfNlKuLncmL7TJTs14g95MrYwByNVQlXwSaeyewmH4x33-w7UjW4iAMYzJ8dBN~8eQTkMnuhKg9TD~rUHX5ghSUcfRgLsKsLpCY34FQg85OOvQl1wKrsgY29xSMfn6pLe0t5PfidMnnnNlNGY2S291Ne15~ZGPLgAfLFNWTou6pEWQ__"

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Xenium Ranger 1.6.0 highlights

  • Initial release of Xenium Ranger!
  • Resegment Xenium data with customizable nucleus expansion distance and the latest 10x cell segmentation algorithm.
  • Import community-developed nucleus and cell segmentations in multiple popular formats (i.e., Baysor).
  • Selected the wrong gene panel when you started the Xenium Analyzer run? Simply fix the mistake by using relabel.
  • All pipelines produce the same output bundle as Xenium Onboard Analysis v1.6, so they are compatible with the same downstream visualization and analysis softwares (e.g., Xenium Explorer).
  • Backwards compatible with all previous Xenium Onboard Analysis versions.
Release Notes