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Previous Versions

Xenium Ranger 3.0.0 (Sep 4, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.9 GB
    md5sum: 10e28b33f0236a5e62d615dcd921a9b1
    curl -o xeniumranger-3.0.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.gz?Expires=1743839996&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=ngzs2m4IokuwmuW~v8fBWeiqv33LpOzPzs9IDTc9yvM8OgNKQkFcRGjb4KdtRlw2R8jtqKPz9Kkez~tYtnR3N5PaHkrFzhREeGabaaWIfemfHskoqQTYWGPAAwSlHvE2HL6rc-2Rig1utS-lKPkdqiN9CDBwGbeqf9-dFQ5fb259jUduXOzh4tlztaKDp7EE0eLmTWdqdr6p0lHVnxzvyJBp64PG9ReTWQml6Hzt~uFgUpKkiLbGgvk8pWN02YIHTDQ34Xn1Ue~hLoUpJE-OFSr1Jr47INHaZePLPVJvf2tboDp2UwfyCeCSA8JaXP1lXFQEnW-Nz5aEbrXs2SavuA__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.7 GB
    md5sum: c31be85a7e19edb8da484c295f3586cf
    curl -o xeniumranger-3.0.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.xz?Expires=1743839996&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=N-wo8HWj6UOom4eBHzV8Hd7~tSGDwucefjhw7sf1-yYdik7ri8F9WIvK3D~dRO1cnMmTrZ48F75iI0cTAs-1AiBTQ4S1bbe4dULfTbnfeI0CVw4gqlhOdBA5QXHToHghN5esl4bVOSnTSDcE8ftKgCsDC6NrwLLzEy9Sulnw4e5wunAkJz1M-5eOdjWDiqJYZABhMYt5-gRlbdQU1x4U15GEjcQfyrDSuJZwgEUfAnmvzcRmwU4rBSObLG2VU51USUnVkONa125s6s6GsDJqt1VzRKF4E14q9LezTsXr-7gSnQA0-wr6hvXHrlWy2WsEpSKhpuMhW-n41IggT4E52Q__"

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Xenium Ranger 3.0.0 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Reanalyzed data gets updated scaled transcript view in Xenium Explorer and analysis summary features introduced in XOA v3.0.
  • New rename subcommand for editing the region and cassette names.
  • Robust to corner cases of importing transcript-assignment data with empty cells.
  • And more - see full release notes.
Release Notes

Xenium Ranger 2.0.1 (Jun 10, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.7 GB
    md5sum: 45d207dc432226dc003a31a287f5ec08
    curl -o xeniumranger-2.0.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.gz?Expires=1743839996&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=AZV0bemt1o9U4lFh3eKuiFwILrVJosyeHo1ng7H-QcK-J~FrKi3Tl1Y-no1wEmDqL3nZzjxc2kDbuF8-dhzyAVvh2Ugl7Qo3abh59HID~InVWj7qYCcYDjsHWi~bYFr-01rmVK6mvSAqDjNZdt8BL1wyESfasG5X5nAawwj5O~4m0V35xh2UUx1eJHw6zzlb8BZI2OQKzHMFe8BUS7DSrayWQDsh124yhTzb1xvBMmTFQwh9N1muAJSwrVw3grtfQFdjS0JzTv-x7QvofRBeT9mYmNPjApvZfH3RoYNh0fQqYV5UXpLIbo4z7P0Gy01tqKvzoTivByLDN1TxmVTcnA__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.6 GB
    md5sum: 244bdbb3d159ff557a7747c03ec487a7
    curl -o xeniumranger-2.0.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.xz?Expires=1743839996&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=fr3~nVm785i1wZ1wxPEmcF80LeRWz~DqmNadEKd7omzEABVb1c-3E4jREjoFNVLDmrS955WQuDYscgtvAlcjyPfKcHZX0UoxhJw44zbskSjD-4LR9-ESQ8pd4tI4~am6zEj0P5SSB3tegmaXIBxOXukyPDhSu5Yw2I5fgOE3Cbme3Wa-gJX99xcxDTDedSKCgrek-VbxcvcpT8~iBLLaULqqGlNaYmQ33m6~VJEz5iXTiDrkEbyqvEUctt9pZurxkWtqWuwB0SDV8PYROHceLhu~RF~QJv7A15LXCjf9li3TD2pPa3TKRrVNL3lDVWpOEYjWzCj4SrIX2j7k9sgvjw__"

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Xenium Ranger 2.0.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Default nuclear expansion distance is 5 µm.
  • Enables reanalysis with multimodal cell segmentation algorithm.
  • Interrupted runs can be resumed.
Release Notes

Xenium Ranger 1.7.1 (Jan 23, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: 51c373964e46c041e08ba73888657edd
    curl -o xeniumranger-1.7.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.gz?Expires=1743839996&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=cqPVmWqbMOjeBIFI9QJh6oJFncv~6d04g4slM-YKbtu~CkJwu-LxbSALC~oZqLCFc6tJndEmTP~E5CieRMUWbNCPeW06uLC7nOR-qxwkvkRxvqFUdy53nmZPp8QyUprFZbzzGA5S6rapQJR07cgtmw7inkmzpk9-8Xk2p-dLe3pRnzHIeoxgj7fsrQ1pA2ZLP4EMzohNXUUIFCPiBGszk2~V2Z9DyDddBVjRsL3Q8MHwDXSte1QSOZM44-iKpLdwooSXnTrR0z3nUGhMbqpYXCoYisbBGPNC~ubHzP-Izr1IvKESWSQkZJrrjUwPmsudJom0~cNkLctAyb~twjDzzQ__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 43e6e4433303aae30973682dc5219f20
    curl -o xeniumranger-1.7.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.xz?Expires=1743839996&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=E3erJlWni39SroK9Sn3JnUdvXaQE3f-IK9kKRF06USo6LeadfhriaTodG5DZmfSOAe7ioF96CMeZEJZl27K2bGEO7OQ0h3BKiTI~UldkZYqByp0fK9T0be6H~Q2stNzoO0gY6a9pXqodkYMpDcfN9bDKdQsX6xkJNhOzLMuXdto8n5eIAoW~rcZZmk-kEDvhw0C5vovX4wfvLADgGKJmXCEREmnOcqHAJ9MuDO8Z9tTPjhmUhpW6gxOfu4kq0ha8eYsINmKn0x78wuuBRq3tQ~7vPTqieAkPS99XMw7s~EWt5MrisbFeB4TUsZbtG~zpEVJVCaJB-gkg27qd9Oc-MA__"

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Xenium Ranger 1.7.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to latest version.
  • Image-based import-segmentation now compatible with segmentation masks.
  • Improved memory usage in the import-segmentation pipeline.
Release Notes

Xenium Ranger 1.6.0 (Aug 17, 2023)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: ebd970ceafc057668b9e664df310a5fb
    curl -o xeniumranger-1.6.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.gz?Expires=1743839996&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Rs1QxeQlz0d0NE3KL4jWvlOSKDvDBzqpskZbH2Km5y0EkO-nEa2Y0wKh6fqTp~MPeVSDgkq1V4P4GFZk1LXeQ9Dsy86ZAqVSyHAiku0CkuVRfIekiSyfzp7S6BFIZO1oPM8C-0qKIyGX8dlIhDWVFDRud3XEaT28Gl9mONuC4FBBspbs5jPnzuWF2ffVDWgyzzaSVW5AJ2msrGJlGbdsMnbDCZBF0~Ecj7l8kTLDQHILe~7AXQYtWNpZz86JxoHJhl3ifzwGHLi7hqytj~TTOCzN1DXsYljsK53NOZKSCsQ2ckbiGCjf9tKzIVDZF~U855VOLM4rlEa0hVcpXiQXCQ__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 6fa799cfeef91264fdc174ad43b6da3f
    curl -o xeniumranger-1.6.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.xz?Expires=1743839996&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=nISHA8904hijY~g5YXtMbNQxS63rOkEuLStTq1WwSidmxEIlvlC7OapGuaxV6ZJEAvTsijGt3B7xqNn21QL~phPjB5nYlGfGoZWFncUMiEPlJYYE-nf2KvkD6iPqdds5s0CTUEIajdEMo1ikz~iL~JfmTaMICG8z8rRZINFn23YKA~Lmo4DIBurJo4W0-PihD~R9fnwaOPve8U~e4h9cj~YVnaPc-js~aVe1sB0IlqSNh4bqYu6BEalJl9RiE8jW8uPxG~JYk1xrP3CXLFFXCZ1CwGQ1dP7krf6xAjPqlku6UKaLTVQd25XveHxXI4Qg1wq4XU4DUMgkQFnQzxREXQ__"

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Xenium Ranger 1.6.0 highlights

  • Initial release of Xenium Ranger!
  • Resegment Xenium data with customizable nucleus expansion distance and the latest 10x cell segmentation algorithm.
  • Import community-developed nucleus and cell segmentations in multiple popular formats (i.e., Baysor).
  • Selected the wrong gene panel when you started the Xenium Analyzer run? Simply fix the mistake by using relabel.
  • All pipelines produce the same output bundle as Xenium Onboard Analysis v1.6, so they are compatible with the same downstream visualization and analysis softwares (e.g., Xenium Explorer).
  • Backwards compatible with all previous Xenium Onboard Analysis versions.
Release Notes