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Previous Versions

Xenium Ranger 3.0.0 (Sep 4, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.9 GB
    md5sum: 10e28b33f0236a5e62d615dcd921a9b1
    curl -o xeniumranger-3.0.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.gz?Expires=1760568345&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=CokPzuS1bWlm9YZL4Gguo6MPzMFJiePoR68WrWSpjQKA7XoEeMXVPqznFFYOFD9t-6aJ53KrtdiRdd-9CENaMYVmzCIeqcXM-Oao97lYc7-hiXklEwH2hTzOs1RVEgI-QZqF2ZJ4Pa2FMi4TLq2300chCtprdkyjACgMV8U6F~buOOt~huOwsg1EwRKRKc5EW-WzZ2BcHpZo~9Xi0kEcrrofM4~a06Ek97U~~c3zfGogcUPtTOik-B6lhhXt7ZKLVVCSjfsfQze~GBihrsldvjFjHoN0x9NiI7lMq0m-rvbgcW8EyF0Z6WwR8TqJDsA14wzWaGGYMd1gtzA-j6SNQw__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.7 GB
    md5sum: c31be85a7e19edb8da484c295f3586cf
    curl -o xeniumranger-3.0.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.0.tar.xz?Expires=1760568345&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=GvEVCb0fiIbjiQUO2t~I3P~kV5P4ZI5~rOIcnqsNdg03DdR~lsXVqRgrLQJOhwTsHitdeHb9EDFzlEFyJTyAnwaOPU3D4hn6SN57mddRJICPM7eBslDQETmXmKnJ4~oFT6VsW84S~jYQd4wlaWObha-w4cWpQsskJm-j2On-BucGM1DpT9NNLqDjeldARP37BB06xmte~2rDJIYyL4hBBZrll0b656Fg71pAJzIqKE6IR4cNJZB9eTDfuz84woduJ-FMUFQd-fIV2oh6OU3A03~XHva45lvSSvahrpn3NR6ogrnf-gddOt-SmMup7ZX0KJGm7YjOZQVECrTAxHjLlw__"

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Xenium Ranger 3.0.0 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Reanalyzed data gets updated scaled transcript view in Xenium Explorer and analysis summary features introduced in XOA v3.0.
  • New rename subcommand for editing the region and cassette names.
  • Robust to corner cases of importing transcript-assignment data with empty cells.
  • And more - see full release notes.
Release Notes

Xenium Ranger 2.0.1 (Jun 10, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.7 GB
    md5sum: 45d207dc432226dc003a31a287f5ec08
    curl -o xeniumranger-2.0.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.gz?Expires=1760568345&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=CgAz2LHuRB0DGwYLkMB96p8Ocb5AoPxw7VzPNTXw4HT~4-~B1XlGCZk3sm3IqZKwN9m4uxZXa1tWEgv4iS6mmSMq6ot0OzZxR7p~raXkayiL71KPwCg2HEK5r3xUEAttLvNIQ6jPmtfJWmEQZoTkTFXQjs94-f2DHt6JGuTseS1WVY5rYJf5Id~AFNBlKDG4wAC5CBE2srHxB3C7p8FC~tkCe75GYcwzMfDNLOs~8IDywgNEOihhC1We8maO2rQQ5fpW9stAuiXyA4koLzAU0MgCDwQ8bBpIwskrqvd~9Qai8LAH~~oFgWt5X0XMl8AdseVxYpQaCAb8KhIkByU9tw__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.6 GB
    md5sum: 244bdbb3d159ff557a7747c03ec487a7
    curl -o xeniumranger-2.0.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.xz?Expires=1760568345&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=kNgH7Y2YIO~~qfU8IN9gaiBFz1UJCf-31kQtVSEa010WlmZ3DCrhrvZ4DDeCB76Wj5POariMN197WJGKLnodS7YBDib39o6Z8VzAz6lNOv-b6MNfUgQVsAeyYMqLKifEUiQe5yyVBzGcxjoK8jI642BrJOBBGyT8vx8W-I-Dz0fW5R-2LxkRQ6QwcgQk5vlWVYLTl-twinkJ~DwqAYxXCT1Gv~aHB24bsltM0tYYSGDplKv73ofyTyNA15KMOTHs4xLZ~jomiZ-dMPaG0k8yEHpP1m0L-uWis7~9Lia0QtWIM-S4UcXgKqS4uJdqjCB3rDle62mdj4Ou-7-Svrgbrw__"

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Xenium Ranger 2.0.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Default nuclear expansion distance is 5 µm.
  • Enables reanalysis with multimodal cell segmentation algorithm.
  • Interrupted runs can be resumed.
Release Notes

Xenium Ranger 1.7.1 (Jan 23, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: 51c373964e46c041e08ba73888657edd
    curl -o xeniumranger-1.7.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.gz?Expires=1760568345&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=J51jDRgmmwvMuKsogfWDY5xkeZNHlggKh-9E~OTOgLNaknm-9c0hrU3wK3zBIoVdEt3x5D796o7zX8bltQYJH~4AML3NHL4lj2m2u-MjOf7flVOt9nsclM6-uhRomae0vAIKaq8az5vlpELJbQBsqsaU0vv0mhIUZLwfgK20qnqxqquEHBXL77rJC25kgVf3XgqRch9f1Iokq758F8AHKN1hcRdlxrRZ6kGN17Bk9sH0U8PlKnj9z-leAAqyiVsBIhhT1MTJsQi2rb3acm6KeoPoSkt5Fdue0~kQEk3AawN7yunsBx9KmTqQ409ep6zHsf2vDO05vL7CONLm1~CogA__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 43e6e4433303aae30973682dc5219f20
    curl -o xeniumranger-1.7.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.xz?Expires=1760568345&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Kjg7H72ImhloDqeX5eGrke8MvMEKL-oJcp-T7hZ8tf3A9Obc1myHZhLD3QZoZbbUkFXj~~9TOf8qjizGgLfzOd4RBCmckkzCX7P9sSUpe-Bvaq00XNgcQxa6495jKSPShhcBnkPZAxiV3egTVe43vbjosKq5Fh6T~c2lOrq2sey63sn6QYgR-6tLjxDPGCKbwZjiw87Ohx44xtzIF-LsSpaFqRuat9bBeQmQuUlZGw5~tVJY~yyOPRVhXGTzb2Jjfi0d9SNefZkmkqopGxDHdIlzHhljwv~cTRNXktAgtkEUiehxQo83YSWVlJeoE0lqDF5H2GCVnF2xNT2lvvnH1w__"

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Xenium Ranger 1.7.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to latest version.
  • Image-based import-segmentation now compatible with segmentation masks.
  • Improved memory usage in the import-segmentation pipeline.
Release Notes

Xenium Ranger 1.6.0 (Aug 17, 2023)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: ebd970ceafc057668b9e664df310a5fb
    curl -o xeniumranger-1.6.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.gz?Expires=1760568345&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=lFkmt1pD13uqXlLwLKR0zd35Jef6tXQcODqLPmMxtt5oiQnHpqIDxk59KBA39oMyBVUE7CytWlO7tXS3ASUN6wWAi9cT8Q~HlwtICvvVw7ZbvlVQxT4v~FRrAQv5cuPukL0BynMnnzVcQws7gYsHneb6qEspNEwHQ8OWsuF2r9jL737vgvhXrGixMKw1b0MK1-u4~McIOgo8VPvvtwlx26ltKxYu3rT-Lk8j-HZOG5B-uzd8wdSoGWObk8IVclVmpwxgkBz3tcZDoo5h7bG0varIWH5Q6lmVKVkJXjwB3Lf8kkpXefsdZCqfRK3jXRVc8xp3RL~Zo0ih3IzoYHcGAQ__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 6fa799cfeef91264fdc174ad43b6da3f
    curl -o xeniumranger-1.6.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.xz?Expires=1760568345&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=QG6Yl2~xLdFTgW2kXfPK7cM2Z53Y~gDgB2zapaz~dJ7IkWWnzfvFPx1NHCS8ewXTtH6Tf1mMkWppPunyyo-dVU1FWF3~wmebLgTcSO2ztgb2a2~P1rpqB2XO0W~2iCNR-toz445P6SRNnuVyo8UNVzHVOzeKBTaDs3XmVu4kq~ZWqPxgD39ZvK92D9EB-P1MNXrpK3mTrKOOLXTg-Ki~2w68KADu-VBb8xZg37YEDfTxYGVxurxU~7U4VdR8rBPVzOtTZn3gxlYDY4y7caM0DnbYjvQJ2Mzc0mgpL8rrc8CQNWx~Wl6wpHEaCVcBs~KdjmN3y~MfIhz8hAO-7y09wg__"

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Xenium Ranger 1.6.0 highlights

  • Initial release of Xenium Ranger!
  • Resegment Xenium data with customizable nucleus expansion distance and the latest 10x cell segmentation algorithm.
  • Import community-developed nucleus and cell segmentations in multiple popular formats (i.e., Baysor).
  • Selected the wrong gene panel when you started the Xenium Analyzer run? Simply fix the mistake by using relabel.
  • All pipelines produce the same output bundle as Xenium Onboard Analysis v1.6, so they are compatible with the same downstream visualization and analysis softwares (e.g., Xenium Explorer).
  • Backwards compatible with all previous Xenium Onboard Analysis versions.
Release Notes