Whole transcriptome gene expression, with flexibility to fix, batch, and run samples on your schedule
We recommend Flex in experiments that...
Use archival or lower-quality samples
Require flexible sample batching
Will scale up and require the lowest cost per-cell
A versatile solution providing 3' gene expression with options for multiomic analysis
We recommend 3' in experiments that...
Require full length transcript readouts
Only require gene expression, or may use ATAC in the future
Have lower cell input requirements
Comprehensive analysis of immune diversity, combining 5' gene expression with multiomic profiling
We recommend 5' in experiments that...
Require full length transcript readouts
Require or may use CRISPR and TCR/BCR sequencing in the future
Have lower cell input requirements
Primary Capability
Probe-based Gene ExpressionGene expression analysis using pre-designed probes with the option to add custom probes
3' Gene ExpressionDetect and quantify RNA molecules near the 3' end of genes
5' Gene ExpressionDetect and quantify RNA molecules near the 5' end of genes
Multiomic Capabilities
Cell Surface ProteinIdentify proteins to categorize cell types, pinpoint biomarkers, and explore cell signaling and interactions
Cell Surface ProteinIdentify proteins to categorize cell types, pinpoint biomarkers, and explore cell signaling and interactions
Cell Surface ProteinIdentify proteins to categorize cell types, pinpoint biomarkers, and explore cell signaling and interactions
CRISPR ScreeningAssess effects of CRISPR perturbations at single cell resolution with direct capture of cellular sgRNAs and changes in gene expression
TCR/BCR SequencingUnderstand clonal expansion and diversity by capturing full-length, paired B-cell and T-cell receptors
Compatible Species
Compatible Sample Types
Assay Input
Resolution
Whole Cell/NucleusCells or nuclei are partitioned into GEM Gel Beads that uniquely barcode each, enabling single cell resolution
Whole Cell/NucleusCells or nuclei are partitioned into GEM Gel Beads that uniquely barcode each, enabling single cell resolution
Whole CellCells or nuclei are partitioned into GEM Gel Beads that uniquely barcode each, enabling single cell resolution
Run Configuration Options
Compatible Instruments
Chromium X and iXAccess single cell analysis at any stage. From Chromium iX, offering cost-effective, lower throughput single cell analysis, upgradable to the high-throughput full-range Chromium X, we make single cell analysis a perfect fit.
Chromium X and iXAccess single cell analysis at any stage. From Chromium iX, offering cost-effective, lower throughput single cell analysis, upgradable to the high-throughput full-range Chromium X, we make single cell analysis a perfect fit.
Chromium X and iXAccess single cell analysis at any stage. From Chromium iX, offering cost-effective, lower throughput single cell analysis, upgradable to the high-throughput full-range Chromium X, we make single cell analysis a perfect fit.
Included Data Processing & Analysis Software
Cell RangerCell Ranger is a set of free analysis pipelines for processing Chromium Single Cell data on-prem.
Cloud AnalysisA platform for running 10x analysis pipelines on optimized cloud clusters for a quick and easy path to results.
Cell RangerCell Ranger is a set of free analysis pipelines for processing Chromium Single Cell data on-prem.
Cloud AnalysisA platform for running 10x analysis pipelines on optimized cloud clusters for a quick and easy path to results.
Cell RangerCell Ranger is a set of free analysis pipelines for processing Chromium Single Cell data on-prem.
Cloud AnalysisA platform for running 10x analysis pipelines on optimized cloud clusters for a quick and easy path to results.
Included Interactive Visualization Tools
Loupe BrowserVisualize and interpret Chromium single cell gene expression data with Loupe Browser, a visualization tool that enables identification of gene expression patterns and cell clusters.
Loupe BrowserVisualize and interpret Chromium single cell gene expression data with Loupe Browser, a visualization tool that enables identification of gene expression patterns and cell clusters.
Loupe BrowserInteractively explore clonotype information and repertoire diversity alongside gene expression data in Loupe Browser.
Loupe V(D)J BrowserInvestigate clonotypes and examine V(D)J transcripts in Single Cell Immune Profiling data with this interactive visualization tool.